C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BMI1 proto-oncogene, polycomb ring finger
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376663 BMI1-001 ENSG00000168283 9606 + 10:22321211-22331484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376663
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376663 12.161±0.00 16.408±0.00 1.233±0.00 12.103±4.91 11.410±1.41 11.968±10.63 4.909±1.91 11.313±7.87 4.579±0.42 5.497±2.37 5.955±4.46 8.379±3.94 5.590±1.17 17.935±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000780 CIL_000780_0002 CGP 10:22315974-22329542
CIL_000783 CIL_000783_0002 CGP 10:22321211-22454224

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0000792 IEA heterochromatin
GO:0001501 IEA skeletal system development
GO:0001701 IEA in utero embryonic development
GO:0003682 IEA chromatin binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006306 IEA DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0006959 IEA humoral immune response
GO:0007379 TAS segment specification
GO:0007420 IEA brain development
GO:0008270 IEA:IDA zinc ion binding
GO:0010468 IMP regulation of gene expression
GO:0016568 IEA chromatin modification
GO:0016573 IEA histone acetylation
GO:0016574 IEA histone ubiquitination
GO:0016604 IEA nuclear body
GO:0021903 IEA rostrocaudal neural tube patterning
GO:0030097 IEP hemopoiesis
GO:0030890 IEA positive regulation of B cell proliferation
GO:0031519 IDA PcG protein complex
GO:0033092 IEA positive regulation of immature T cell proliferation in thymus
GO:0035102 IDA PRC1 complex
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0048103 IEA somatic stem cell division
GO:0048146 IMP positive regulation of fibroblast proliferation
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0051443 IDA positive regulation of ubiquitin-protein transferase activity
GO:0071535 IPI RING-like zinc finger domain binding
GO:2001234 IEA negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028071 Bmi1-001 protein_coding Mus_musculus 0 3550
ENSMUST00000051929 Bmi1-201 protein_coding Mus_musculus 0 2913
ENSMUST00000182652 Gm5946-002 processed_transcript Mus_musculus 0 2702
ENSMUST00000182340 Gm5946-001 transcribed_processed_pseudogene Mus_musculus 0 1304
ENSMUST00000156284 Bmi1-003 protein_coding Mus_musculus 0 865
ENSMUST00000150834 Bmi1-002 protein_coding Mus_musculus 0 686
ENSMUST00000132014 Bmi1-006 processed_transcript Mus_musculus 0 599
ENSMUST00000134734 Bmi1-004 protein_coding Mus_musculus 0 501
ENSDART00000012487 bmi1b-201 protein_coding Danio_rerio 0 477
ENSDART00000135417 bmi1b-001 protein_coding Danio_rerio 0 477
ENSMUST00000147365 Bmi1-005 protein_coding Mus_musculus 0 374

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