C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Bmi1 polycomb ring finger oncogene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026739 Bmi1 10090 + 2:18677018-18686629 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028071 Bmi1-001 18677018-18686629 protein_coding
  ENSMUST00000051929 Bmi1-201 18680372-18686130 protein_coding
  ENSMUST00000132014 Bmi1-006 18677280-18682365 processed_transcript
  ENSMUST00000134734 Bmi1-004 18680994-18683030 protein_coding
  ENSMUST00000147365 Bmi1-005 18681107-18682856 protein_coding
  ENSMUST00000150834 Bmi1-002 18677807-18683676 protein_coding
  ENSMUST00000156284 Bmi1-003 18680374-18684013 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028071ENSMUST00000051929ENSMUST00000132014ENSMUST00000156284
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028071 4.958±1.14 12.417±6.21 5.651±0.53 11.648±9.25 10.194±4.95 3.825±1.60 5.048±0.80 9.141±2.16 3.129±1.00 13.476±3.00 4.993±0.55 9.711±5.67 3.363±1.50 33.319±8.11
ENSMUST00000051929 5.611±2.13 9.933±3.64 3.839±0.17 7.848±5.34 4.746±0.73 1.757±0.15 3.970±0.90 2.407±0.00 3.066±1.02 3.307±0.47 4.208±0.57 7.393±3.18 2.909±2.01 6.448±3.06
ENSMUST00000132014 N/A 18.137±4.64 N/A N/A 8.294±0.00 N/A N/A N/A 2.925±0.00 N/A N/A N/A N/A 44.983±1.51
ENSMUST00000156284 N/A N/A N/A 3.806±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.271±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000780 CIL_000780_0003 CGP 2:18672384-18686629
CIL_00091O CIL_00091O_0002 VISTA 2:18672805-19274286

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA:ISS ubiquitin ligase complex
GO:0000792 IDA heterochromatin
GO:0001501 IMP skeletal system development
GO:0001701 IGI in utero embryonic development
GO:0003682 IDA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0005737 IEA cytoplasm
GO:0006306 IMP DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0006959 IMP humoral immune response
GO:0007420 IMP brain development
GO:0008270 IEA:ISS zinc ion binding
GO:0009987 TAS cellular process
GO:0010468 IEA regulation of gene expression
GO:0016573 IGI histone acetylation
GO:0016574 IDA histone ubiquitination
GO:0016604 IDA nuclear body
GO:0021903 IMP rostrocaudal neural tube patterning
GO:0030097 IEA hemopoiesis
GO:0030890 IMP positive regulation of B cell proliferation
GO:0031519 IDA PcG protein complex
GO:0033092 IMP positive regulation of immature T cell proliferation in thymus
GO:0035102 IEA PRC1 complex
GO:0043565 IDA sequence-specific DNA binding
GO:0048103 IMP somatic stem cell division
GO:0048146 IEA positive regulation of fibroblast proliferation
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0051443 ISS positive regulation of ubiquitin-protein transferase activity
GO:0071535 IEA RING-like zinc finger domain binding
GO:2001234 IGI negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006010 bmi1a B lymphoma Mo-MLV insertion region 1a protein_coding Danio_rerio
ENSDARG00000013076 bmi1b B lymphoma Mo-MLV insertion region 1b protein_coding Danio_rerio
ENSG00000168283 BMI1 BMI1 proto-oncogene, polycomb ring finger protein_coding Homo_sapiens

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