C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, voltage-gated, type XI, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168356 SCN11A 9606 - 3:38845769-38950561 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302328 SCN11A-001 38845769-38950561 protein_coding
  ENST00000444237 SCN11A-002 38849278-38950561 protein_coding
  ENST00000456224 SCN11A-003 38846694-38950362 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000302328ENST00000444237ENST00000456224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000302328 0.110±0.00 N/A N/A 0.151±0.00 0.139±0.00 N/A N/A 0.005±0.00 0.034±0.01 0.521±0.23 0.261±0.01
ENST00000444237 N/A 0.031±0.00 0.073±0.00 0.028±0.00 0.135±0.00 N/A 0.021±0.00 N/A N/A 0.113±0.00 0.311±0.00
ENST00000456224 N/A N/A 0.112±0.00 0.179±0.00 N/A 0.199±0.00 N/A N/A 0.008±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BE CIL_0008BE_0001 VISTA 3:38261144-38866061
CIL_0004RE CIL_0004RE_0001 CGP 3:38696802-38950561
CIL_0006H1 CIL_0006H1_0001 CGP 3:38845769-39096671

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IBA:IEA voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 TAS:IEA sodium ion transport
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0030424 IEA axon
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IBA sodium ion transmembrane transport
GO:0042493 TAS response to drug
GO:0044299 IEA C-fiber
GO:0051930 ISS regulation of sensory perception of pain
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078758 SCN11A sodium channel, voltage-gated, type XI, alpha subunit protein_coding Danio_rerio
ENSMUSG00000034115 Scn11a sodium channel, voltage-gated, type XI, alpha protein_coding Mus_musculus

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