C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004RE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185313-ENSG00000168356 CGP 9606 3:38696802-38950561
GeneTranscriptPositionBiotype
ENSG00000168356 (SCN11A)
sodium channel, voltage-gated, type XI, alpha subunit 		ENST00000302328 (SCN11A-001) 38845769-38950561 protein_coding
ENST00000444237 (SCN11A-002) 38849278-38950561 protein_coding
ENST00000456224 (SCN11A-003) 38846694-38950362 protein_coding
ENSG00000185313 (SCN10A)
sodium channel, voltage-gated, type X, alpha subunit 		ENST00000449082 (SCN10A-001) 38696802-38794010 protein_coding
ENSG00000215941 (AC116038.1)
 ENST00000401122 (AC116038.1-201) 38907314-38907389 miRNA
ENSG00000231243 (RP11-134J21.1)
 ENST00000432250 (RP11-134J21.1-001) 38823902-38825302 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004RE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034533-ENSMUSG00000034115 CGP 10090 9:119608456-119825456
GeneTranscriptPositionBiotype
ENSMUSG00000034115 (Scn11a)
sodium channel, voltage-gated, type XI, alpha 		ENSMUST00000070617 (Scn11a-201) 119753763-119825456 protein_coding
ENSMUSG00000034533 (Scn10a)
sodium channel, voltage-gated, type X, alpha 		ENSMUST00000084787 (Scn10a-201) 119608456-119719032 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RE_0001ENSG00000168356ENST00000302328ENST00000444237ENST00000456224ENSG00000185313ENST00000449082ENSG00000215941ENST00000401122ENSG00000231243ENST00000432250CIL_0004RE_0002ENSMUSG00000034115ENSMUST00000070617ENSMUSG00000034533ENSMUST00000084787
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004RE_0001ENSG00000168356ENST00000302328ENST00000444237ENST00000456224ENSG00000185313ENST00000449082ENSG00000215941ENST00000401122ENSG00000231243ENST00000432250CIL_0004RE_0002ENSMUSG00000034115ENSMUST00000070617ENSMUSG00000034533ENSMUST00000084787
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168356 ENST00000302328 0.110±0.00 N/A N/A 0.151±0.00 0.139±0.00 N/A N/A N/A N/A N/A 0.005±0.00 0.034±0.01 0.521±0.23 0.261±0.01
ENST00000444237 N/A 0.031±0.00 0.073±0.00 0.028±0.00 0.135±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A 0.113±0.00 0.311±0.00
ENST00000456224 N/A N/A 0.112±0.00 0.179±0.00 N/A 0.199±0.00 N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A
ENSG00000185313 ENST00000449082 N/A 0.005±0.00 N/A N/A N/A N/A 0.029±0.01 N/A N/A 0.009±0.00 N/A 0.005±0.00 0.024±0.01 0.065±0.05
ENSG00000215941 ENST00000401122 0.341±0.00 0.324±0.00 N/A N/A N/A 0.292±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231243 ENST00000432250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.042±0.78
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034115 ENSMUST00000070617 0.011±0.00 N/A 0.011±0.00 0.061±0.00 0.046±0.03 0.211±0.07 0.019±0.01 0.016±0.00 0.008±0.00 0.023±0.01 0.010±0.01 0.020±0.01 0.009±0.01 0.118±0.04
ENSMUSG00000034533 ENSMUST00000084787 N/A 0.013±0.00 0.002±0.00 0.108±0.05 0.007±0.00 0.027±0.00 0.134±0.08 0.004±0.00 0.043±0.02 0.122±0.08 N/A 0.203±0.08 0.010±0.00 0.133±0.00

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