C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006H1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168356-ENSG00000114742 CGP 9606 3:38845769-39096671
GeneTranscriptPositionBiotype
ENSG00000114742 (WDR48)
WD repeat domain 48 		ENST00000302313 (WDR48-001) 39051998-39096388 protein_coding
ENST00000413099 (WDR48-004) 39052016-39095078 nonsense_mediated_decay
ENST00000420940 (WDR48-003) 39052020-39096671 nonsense_mediated_decay
ENST00000423296 (WDR48-007) 39052013-39068820 nonsense_mediated_decay
ENST00000433841 (WDR48-006) 39052019-39069690 nonsense_mediated_decay
ENST00000441361 (WDR48-008) 39052301-39074749 protein_coding
ENST00000463198 (WDR48-011) 39078161-39086384 processed_transcript
ENST00000466405 (WDR48-005) 39089568-39096664 processed_transcript
ENST00000477197 (WDR48-010) 39087818-39091694 processed_transcript
ENST00000489838 (WDR48-009) 39078011-39084187 processed_transcript
ENSG00000168356 (SCN11A)
sodium channel, voltage-gated, type XI, alpha subunit 		ENST00000302328 (SCN11A-001) 38845769-38950561 protein_coding
ENST00000444237 (SCN11A-002) 38849278-38950561 protein_coding
ENST00000456224 (SCN11A-003) 38846694-38950362 protein_coding
ENSG00000215941 (AC116038.1)
 ENST00000401122 (AC116038.1-201) 38907314-38907389 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006H1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034115-ENSMUSG00000032512 CGP 10090 9:119753763-119926579
GeneTranscriptPositionBiotype
ENSMUSG00000032512 (Wdr48)
WD repeat domain 48 		ENSMUST00000036561 (Wdr48-201) 119894895-119926579 protein_coding
ENSMUSG00000032513 (Gorasp1)
golgi reassembly stacking protein 1 		ENSMUST00000035099 (Gorasp1-201) 119925673-119937558 protein_coding
ENSMUSG00000034115 (Scn11a)
sodium channel, voltage-gated, type XI, alpha 		ENSMUST00000070617 (Scn11a-201) 119753763-119825456 protein_coding
ENSMUSG00000052336 (Cx3cr1)
chemokine (C-X3-C motif) receptor 1 		ENSMUST00000064165 (Cx3cr1-201) 120048693-120068282 protein_coding
ENSMUST00000177637 (Cx3cr1-202) 119901616-120068283 protein_coding
ENSMUSG00000097223 (Gm2449)
predicted gene 2449 		ENSMUST00000180676 (Gm2449-201) 119892703-119894863 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006H1_0001ENSG00000114742ENST00000302313ENST00000413099ENST00000420940ENST00000423296ENST00000433841ENST00000441361ENST00000463198ENST00000466405ENST00000477197ENST00000489838ENSG00000168356ENST00000302328ENST00000444237ENST00000456224ENSG00000215941ENST00000401122CIL_0006H1_0002ENSMUSG00000032512ENSMUST00000036561ENSMUSG00000032513ENSMUST00000035099ENSMUSG00000034115ENSMUST00000070617ENSMUSG00000052336ENSMUST00000064165ENSMUST00000177637ENSMUSG00000097223ENSMUST00000180676
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006H1_0001ENSG00000114742ENST00000302313ENST00000413099ENST00000420940ENSG00000168356ENST00000302328ENST00000444237ENST00000456224ENSG00000215941ENST00000401122CIL_0006H1_0002ENSMUSG00000032512ENSMUST00000036561ENSMUSG00000032513ENSMUST00000035099ENSMUSG00000034115ENSMUST00000070617ENSMUSG00000052336ENSMUST00000064165ENSMUST00000177637ENSMUSG00000097223ENSMUST00000180676
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114742 ENST00000302313 4.766±0.00 3.824±0.00 2.740±0.00 4.259±0.12 4.420±0.97 3.953±0.11 1.949±1.13 3.495±1.44 7.576±0.00 4.478±1.86 1.717±0.00 5.092±1.34 4.921±2.09 20.142±8.77
ENST00000413099 N/A N/A 3.359±0.00 N/A N/A 3.258±0.00 N/A N/A 4.802±0.00 8.088±0.00 1.281±0.00 2.606±0.00 N/A 22.989±0.00
ENST00000420940 3.206±0.00 4.946±0.00 N/A 5.870±1.83 5.371±0.00 5.657±0.00 2.080±1.35 3.736±2.69 2.275±0.00 3.476±0.00 1.928±0.86 5.462±0.82 6.382±0.66 20.986±0.00
ENST00000423296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168356 ENST00000302328 0.110±0.00 N/A N/A 0.151±0.00 0.139±0.00 N/A N/A N/A N/A N/A 0.005±0.00 0.034±0.01 0.521±0.23 0.261±0.01
ENST00000444237 N/A 0.031±0.00 0.073±0.00 0.028±0.00 0.135±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A 0.113±0.00 0.311±0.00
ENST00000456224 N/A N/A 0.112±0.00 0.179±0.00 N/A 0.199±0.00 N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A
ENSG00000215941 ENST00000401122 0.341±0.00 0.324±0.00 N/A N/A N/A 0.292±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032512 ENSMUST00000036561 7.545±1.91 11.519±7.40 10.810±1.02 14.070±1.04 7.666±4.04 11.525±1.60 3.418±1.57 8.249±0.58 5.966±2.44 8.593±0.95 2.056±0.78 14.321±2.91 13.003±0.83 38.839±21.35
ENSMUSG00000032513 ENSMUST00000035099 13.297±0.21 18.759±1.17 16.623±2.65 9.886±1.87 10.492±1.58 21.870±0.91 8.524±0.55 10.750±1.12 9.673±2.05 9.894±0.72 5.974±0.59 14.820±3.96 8.611±2.22 10.620±1.31
ENSMUSG00000034115 ENSMUST00000070617 0.011±0.00 N/A 0.011±0.00 0.061±0.00 0.046±0.03 0.211±0.07 0.019±0.01 0.016±0.00 0.008±0.00 0.023±0.01 0.010±0.01 0.020±0.01 0.009±0.01 0.118±0.04
ENSMUSG00000052336 ENSMUST00000064165 0.735±0.55 2.968±1.32 0.483±0.01 1.067±0.35 0.416±0.15 0.731±0.00 0.382±0.08 0.571±0.20 0.455±0.26 0.755±0.07 0.085±0.05 2.570±1.53 0.368±0.20 0.239±0.13
ENSMUST00000177637 6.049±5.21 6.548±2.02 0.802±0.07 1.268±0.52 3.139±0.46 5.965±1.27 1.454±0.07 2.092±0.26 0.567±0.35 5.317±0.33 0.020±0.01 5.747±3.02 0.483±0.35 1.087±0.29
ENSMUSG00000097223 ENSMUST00000180676 0.106±0.00 N/A 0.104±0.03 0.153±0.08 N/A 0.404±0.11 0.146±0.08 0.207±0.09 0.075±0.03 N/A 0.190±0.04 0.105±0.04 0.141±0.09 3.357±0.35

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