C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: surfactant protein B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168878 SFTPB 9606 - 2:85657314-85668741 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000393822 SFTPB-201 85657318-85668741 protein_coding
  ENST00000409383 SFTPB-003 85658290-85668741 protein_coding
  ENST00000428225 SFTPB-002 85658255-85668172 protein_coding
  ENST00000473692 SFTPB-005 85666535-85668189 retained_intron
  ENST00000491167 SFTPB-006 85662214-85663547 retained_intron
  ENST00000494165 SFTPB-007 85661218-85663478 protein_coding
  ENST00000519937 SFTPB-001 85657314-85668203 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393822ENST00000409383ENST00000428225ENST00000473692ENST00000519937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393822 N/A N/A N/A N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A 0.037±0.00 0.046±0.00 N/A
ENST00000409383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A
ENST00000428225 N/A N/A N/A N/A N/A N/A N/A N/A N/A 533.996±0.00 N/A N/A N/A N/A
ENST00000473692 N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A N/A N/A 0.143±0.04 N/A N/A
ENST00000519937 0.076±0.00 0.311±0.00 0.016±0.00 0.215±0.00 0.144±0.00 0.086±0.01 0.043±0.00 N/A 0.101±0.00 191.544±153.40 0.118±0.00 0.136±0.14 0.172±0.11 0.193±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0005764 IEA lysosome
GO:0006629 IEA lipid metabolic process
GO:0006665 IEA sphingolipid metabolic process
GO:0007585 IEA respiratory gaseous exchange
GO:0009887 TAS organ morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067566 sftpbb surfactant protein Bb protein_coding Danio_rerio
ENSDARG00000094708 sftpba surfactant protein Ba protein_coding Danio_rerio
ENSMUSG00000056370 Sftpb surfactant associated protein B protein_coding Mus_musculus

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