C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: surfactant protein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393822 SFTPB-201 ENSG00000168878 9606 - 2:85657318-85668741 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryPlacentaENST00000393822
Transcript ID Kidney Ovary Placenta
ENST00000393822 0.269±0.00 0.037±0.00 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005764 IEA lysosome
GO:0006629 IEA lipid metabolic process
GO:0006665 IEA sphingolipid metabolic process
GO:0007585 IEA respiratory gaseous exchange
GO:0009887 TAS organ morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182014 Sftpb-001 nonsense_mediated_decay Mus_musculus 0 699
ENSMUST00000183278 Sftpb-002 nonsense_mediated_decay Mus_musculus 0 693
ENSMUST00000070437 Sftpb-201 protein_coding Mus_musculus 0 684
ENSMUST00000000608 Gm2a-001 protein_coding Mus_musculus 0.00002 57

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