C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: surfactant associated protein B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056370 Sftpb 10090 + 6:72304610-72314371 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070437 Sftpb-201 72304625-72312932 protein_coding
  ENSMUST00000182014 Sftpb-001 72304620-72314367 nonsense_mediated_decay
  ENSMUST00000182765 Sftpb-004 72306406-72314045 protein_coding
  ENSMUST00000183018 Sftpb-003 72304610-72314371 protein_coding
  ENSMUST00000183278 Sftpb-002 72304625-72312932 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182014ENSMUST00000182765ENSMUST00000183018ENSMUST00000183278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182014 0.040±0.00 0.070±0.00 N/A 0.071±0.00 0.147±0.09 0.078±0.04 1.020±0.01 N/A 0.049±0.02 1131.473±170.87 0.267±0.06 0.306±0.14 0.078±0.00 0.032±0.00
ENSMUST00000182765 N/A N/A 0.007±0.00 0.033±0.00 0.105±0.01 N/A 0.630±0.00 N/A N/A N/A N/A 0.079±0.04 0.047±0.00 0.030±0.00
ENSMUST00000183018 0.035±0.00 0.042±0.01 N/A 0.016±0.00 0.149±0.00 0.120±0.07 0.273±0.26 0.022±0.01 0.049±0.03 N/A 0.059±0.02 0.160±0.05 0.137±0.00 0.015±0.00
ENSMUST00000183278 0.197±0.16 0.241±0.18 N/A 0.061±0.00 0.345±0.17 0.059±0.03 3.086±0.51 N/A 0.090±0.03 2597.342±843.06 0.318±0.00 0.252±0.10 0.116±0.05 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005764 IEA lysosome
GO:0006665 IEA sphingolipid metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067566 sftpbb surfactant protein Bb protein_coding Danio_rerio
ENSDARG00000094708 sftpba surfactant protein Ba protein_coding Danio_rerio
ENSG00000168878 SFTPB surfactant protein B protein_coding Homo_sapiens

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