C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium voltage-gated channel, shaker-related subfamily, beta member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169282 KCNAB1 9606 + 3:156037701-156539138 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302490 KCNAB1-001 156291037-156538756 protein_coding
  ENST00000389634 KCNAB1-006 156291908-156536747 protein_coding
  ENST00000389636 KCNAB1-003 156120578-156537346 protein_coding
  ENST00000461717 KCNAB1-013 156456924-156515147 processed_transcript
  ENST00000471742 KCNAB1-004 156142962-156538604 protein_coding
  ENST00000472028 KCNAB1-009 156037701-156514424 protein_coding
  ENST00000475456 KCNAB1-010 156273553-156514408 protein_coding
  ENST00000476362 KCNAB1-012 156455993-156514405 processed_transcript
  ENST00000477912 KCNAB1-007 156037701-156474763 processed_transcript
  ENST00000478609 KCNAB1-008 156037701-156453260 retained_intron
  ENST00000489036 KCNAB1-011 156291920-156514391 nonsense_mediated_decay
  ENST00000490337 KCNAB1-002 156120548-156538545 protein_coding
  ENST00000496923 KCNAB1-014 156457478-156460547 processed_transcript
  ENST00000497291 KCNAB1-005 156457210-156537241 processed_transcript
  ENST00000618897 KCNAB1-201 156290987-156539138 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000302490ENST00000389634ENST00000461717ENST00000471742ENST00000475456ENST00000489036ENST00000490337ENST00000497291ENST00000618897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000302490 N/A N/A N/A 4.286±1.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000389634 N/A N/A N/A N/A 1.072±0.00 N/A N/A N/A N/A N/A 0.161±0.00 0.123±0.00 N/A
ENST00000461717 N/A N/A N/A 10.763±0.00 N/A N/A N/A N/A N/A N/A N/A 0.217±0.00 N/A
ENST00000471742 4.911±0.00 3.221±0.00 N/A N/A 3.494±0.00 4.907±0.00 1.600±0.00 0.387±0.00 1.378±0.00 0.832±0.46 0.479±0.00 0.666±0.38 1.523±1.24
ENST00000475456 N/A N/A N/A N/A N/A 3.608±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000489036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A
ENST00000490337 1.459±0.00 1.302±0.00 N/A 5.393±0.00 1.104±0.23 N/A N/A N/A N/A N/A 0.309±0.00 N/A 1.974±0.00
ENST00000497291 N/A N/A 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.234±0.00
ENST00000618897 N/A N/A N/A 2.029±0.00 0.748±0.00 N/A 0.600±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000667 CIL_000667_0003 CGP 3:156037701-156555184

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0006813 TAS:IEA potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0007611 IEA learning or memory
GO:0015459 TAS potassium channel regulator activity
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport
GO:1901016 IEA regulation of potassium ion transmembrane transporter activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008140 kcnab1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Danio_rerio
ENSDARG00000040741 KCNAB1 (2 of 3) potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Danio_rerio
ENSDARG00000090580 kcnab1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Danio_rerio
ENSMUSG00000027827 Kcnab1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Mus_musculus

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