C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium voltage-gated channel, shaker-related subfamily, beta member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027827 Kcnab1 10090 + 3:65109384-65378223 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049230 Kcnab1-001 65109384-65378219 protein_coding
  ENSMUST00000159525 Kcnab1-004 65109384-65365788 protein_coding
  ENSMUST00000160136 Kcnab1-006 65297414-65357085 protein_coding
  ENSMUST00000161404 Kcnab1-002 65188103-65378223 protein_coding
  ENSMUST00000161956 Kcnab1-005 65353767-65358820 processed_transcript
  ENSMUST00000161979 Kcnab1-003 65253428-65377084 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049230ENSMUST00000159525ENSMUST00000160136ENSMUST00000161404ENSMUST00000161956ENSMUST00000161979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049230 0.867±0.55 0.300±0.18 0.398±0.00 6.960±8.50 N/A 0.287±0.15 N/A 0.081±0.02 0.064±0.02 0.112±0.03 0.615±0.31 2.258±1.09 0.097±0.02 N/A
ENSMUST00000159525 N/A 0.268±0.10 N/A 8.271±0.00 N/A 0.151±0.00 N/A N/A 0.033±0.00 0.058±0.03 N/A 0.773±0.00 0.098±0.02 N/A
ENSMUST00000160136 0.529±0.00 0.881±0.00 N/A N/A 0.481±0.38 N/A 0.876±0.23 0.519±0.00 N/A N/A N/A 4.465±0.12 N/A N/A
ENSMUST00000161404 N/A N/A 0.328±0.00 N/A 0.245±0.12 N/A 0.392±0.02 0.158±0.07 0.092±0.06 0.254±0.10 0.440±0.00 0.735±0.00 0.207±0.14 0.726±0.00
ENSMUST00000161956 N/A 0.055±0.00 N/A N/A 0.046±0.03 0.061±0.04 N/A 0.024±0.00 0.037±0.02 0.060±0.01 N/A N/A 0.070±0.03 N/A
ENSMUST00000161979 0.276±0.00 N/A N/A N/A 0.194±0.13 N/A N/A 0.208±0.10 N/A 0.109±0.00 N/A 1.834±0.76 N/A 1.834±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F8 CIL_0007F8_0002 CGP 3:64690660-65378223
CIL_000667 CIL_000667_0004 CGP 3:65109384-65392623

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007611 IMP learning or memory
GO:0008076 IC voltage-gated potassium channel complex
GO:0071805 IEA potassium ion transmembrane transport
GO:1901016 IMP regulation of potassium ion transmembrane transporter activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008140 kcnab1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Danio_rerio
ENSDARG00000040741 KCNAB1 (2 of 3) potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Danio_rerio
ENSDARG00000090580 kcnab1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Danio_rerio
ENSG00000169282 KCNAB1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein_coding Homo_sapiens

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