C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, shaker-related subfamily, beta member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471742 KCNAB1-004 ENSG00000169282 9606 + 3:156142962-156538604 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000471742
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000471742 4.911±0.00 3.221±0.00 3.494±0.00 4.907±0.00 1.600±0.00 0.387±0.00 1.378±0.00 0.832±0.46 0.479±0.00 0.666±0.38 1.523±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000667 CIL_000667_0003 CGP 3:156037701-156555184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0006813 TAS:IEA potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0015459 TAS potassium channel regulator activity
GO:0016021 IEA integral component of membrane
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049230 Kcnab1-001 protein_coding Mus_musculus 0 1520
ENSMUST00000161979 Kcnab1-003 protein_coding Mus_musculus 0 1511
ENSMUST00000161404 Kcnab1-002 protein_coding Mus_musculus 0 1511
ENSMUST00000159525 Kcnab1-004 protein_coding Mus_musculus 0 1088
ENSMUST00000160136 Kcnab1-006 protein_coding Mus_musculus 0 575
ENSMUST00000161956 Kcnab1-005 processed_transcript Mus_musculus 0 279

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