C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: snurportin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169371 SNUPN 9606 - 15:75598083-75626469 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308588 SNUPN-001 75598083-75625815 protein_coding
  ENST00000563793 SNUPN-008 75617520-75625179 protein_coding
  ENST00000563875 SNUPN-007 75621046-75625663 protein_coding
  ENST00000564086 SNUPN-005 75609890-75626469 protein_coding
  ENST00000564644 SNUPN-002 75598089-75625688 protein_coding
  ENST00000564675 SNUPN-003 75598122-75625693 protein_coding
  ENST00000567134 SNUPN-004 75598083-75625794 protein_coding
  ENST00000567437 SNUPN-011 75598508-75605364 retained_intron
  ENST00000568078 SNUPN-010 75600791-75617524 protein_coding
  ENST00000568162 SNUPN-009 75617409-75625638 protein_coding
  ENST00000569817 SNUPN-006 75605199-75626159 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308588ENST00000564086ENST00000564675
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308588 10.735±0.00 4.438±1.54 6.220±3.78 7.737±0.00 4.827±0.00 6.548±5.35 3.041±2.03 5.498±1.87 3.355±1.76 12.872±0.63 10.742±2.41 25.632±4.83
ENST00000564086 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.232±0.00 N/A N/A
ENST00000564675 N/A 1.313±0.00 N/A 1.177±0.00 0.823±0.00 N/A 1.133±0.00 N/A 2.756±0.00 2.441±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005A2 CIL_0005A2_0002 CGP 15:75463251-75626469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000339 TAS RNA cap binding
GO:0000387 TAS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005643 TAS nuclear pore
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006606 IEA protein import into nucleus
GO:0008565 IEA protein transporter activity
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0034660 TAS ncRNA metabolic process
GO:0061015 IEA snRNA import into nucleus
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008395 snupn snurportin 1 protein_coding Danio_rerio
ENSMUSG00000055334 Snupn snurportin 1 protein_coding Mus_musculus

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