C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: snurportin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308588 SNUPN-001 ENSG00000169371 9606 - 15:75598083-75625815 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308588
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308588 10.735±0.00 4.438±1.54 6.220±3.78 7.737±0.00 4.827±0.00 6.548±5.35 3.041±2.03 5.498±1.87 3.355±1.76 12.872±0.63 10.742±2.41 25.632±4.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005A2 CIL_0005A2_0002 CGP 15:75463251-75626469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000339 TAS RNA cap binding
GO:0000387 TAS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005643 TAS nuclear pore
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006606 IEA protein import into nucleus
GO:0008565 IEA protein transporter activity
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0034660 TAS ncRNA metabolic process
GO:0061015 IEA snRNA import into nucleus
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068856 Snupn-001 protein_coding Mus_musculus 0 1354

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