C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169507 SLC38A11 9606 - 2:164896186-164955525 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303735 SLC38A11-001 164896186-164955525 protein_coding
  ENST00000409058 SLC38A11-002 164898334-164955477 protein_coding
  ENST00000409149 SLC38A11-003 164898329-164955486 protein_coding
  ENST00000409662 SLC38A11-009 164898374-164955246 protein_coding
  ENST00000424914 SLC38A11-010 164898669-164937423 protein_coding
  ENST00000465898 SLC38A11-006 164915425-164939503 retained_intron
  ENST00000470576 SLC38A11-008 164898608-164911940 retained_intron
  ENST00000483641 SLC38A11-007 164898528-164912086 retained_intron
  ENST00000492134 SLC38A11-004 164944562-164953283 retained_intron
  ENST00000493887 SLC38A11-005 164911658-164937697 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303735ENST00000409149ENST00000424914ENST00000465898ENST00000470576ENST00000483641ENST00000492134ENST00000493887
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303735 0.312±0.00 2.655±0.00 N/A 0.053±0.00 0.010±0.00 N/A 0.821±0.00 0.111±0.06 N/A 0.051±0.00 2.674±1.61 0.056±0.03 0.228±0.10
ENST00000409149 N/A N/A N/A N/A N/A 0.129±0.00 0.749±0.00 N/A N/A 0.175±0.00 N/A 0.013±0.00 0.534±0.00
ENST00000424914 N/A N/A 1.284±0.00 N/A N/A N/A N/A N/A 1.078±0.00 N/A N/A N/A N/A
ENST00000465898 N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A N/A N/A 0.076±0.00 N/A
ENST00000470576 N/A N/A N/A 0.693±0.52 N/A N/A N/A 0.943±0.00 N/A N/A N/A N/A N/A
ENST00000483641 N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492134 N/A N/A N/A 0.325±0.00 N/A N/A N/A N/A 0.877±0.00 N/A N/A 0.262±0.00 N/A
ENST00000493887 N/A N/A N/A N/A 0.366±0.00 0.198±0.00 N/A N/A N/A N/A 4.728±0.00 N/A 0.182±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CM CIL_0006CM_0001 CGP 2:164653624-164955525
CIL_0006CP CIL_0006CP_0001 CGP 2:164896186-165204067

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040257 slc38a11 solute carrier family 38, member 11 protein_coding Danio_rerio
ENSDARG00000089280 slc38a11 solute carrier family 38, member 11 protein_coding Danio_rerio
ENSMUSG00000061171 Slc38a11 solute carrier family 38, member 11 protein_coding Mus_musculus

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