C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061171 Slc38a11 10090 - 2:65316430-65364034 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112420 Slc38a11-201 65316633-65364026 protein_coding
  ENSMUST00000124918 Slc38a11-005 65316715-65363463 protein_coding
  ENSMUST00000127623 Slc38a11-004 65316430-65361401 protein_coding
  ENSMUST00000141690 Slc38a11-006 65354796-65364030 processed_transcript
  ENSMUST00000145583 Slc38a11-003 65352887-65363923 processed_transcript
  ENSMUST00000152324 Slc38a11-001 65322668-65364034 protein_coding
  ENSMUST00000155422 Slc38a11-002 65349474-65364034 processed_transcript
  ENSMUST00000155962 Slc38a11-007 65350038-65364000 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112420ENSMUST00000124918ENSMUST00000127623ENSMUST00000141690ENSMUST00000145583ENSMUST00000152324ENSMUST00000155422ENSMUST00000155962
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112420 0.878±0.37 3.813±1.23 0.161±0.01 0.200±0.07 0.774±0.32 0.353±0.19 0.314±0.12 N/A 0.258±0.11 0.222±0.09 0.481±0.10 N/A 0.095±0.00
ENSMUST00000124918 N/A N/A 0.343±0.00 0.470±0.26 N/A 0.326±0.12 N/A 0.006±0.00 0.435±0.21 N/A 0.302±0.06 0.014±0.00 N/A
ENSMUST00000127623 N/A N/A 0.154±0.00 N/A N/A 0.134±0.02 0.092±0.03 N/A 0.366±0.00 0.164±0.05 0.358±0.17 N/A 0.033±0.00
ENSMUST00000141690 0.486±0.00 2.746±0.90 N/A 0.414±0.00 1.191±0.54 N/A 0.272±0.04 N/A N/A N/A 0.764±0.39 0.034±0.00 N/A
ENSMUST00000145583 N/A N/A N/A N/A N/A N/A N/A 0.016±0.02 N/A 0.019±0.00 0.119±0.05 N/A 0.015±0.00
ENSMUST00000152324 N/A 1.760±0.88 N/A 0.251±0.08 0.277±0.00 0.330±0.00 0.207±0.14 0.026±0.00 N/A N/A 0.743±0.35 0.028±0.00 0.027±0.00
ENSMUST00000155422 N/A 1.338±0.00 N/A 0.103±0.00 N/A N/A N/A 0.007±0.01 N/A 0.014±0.00 0.280±0.00 0.013±0.00 0.015±0.00
ENSMUST00000155962 N/A N/A N/A 0.673±0.30 N/A N/A 0.381±0.00 N/A N/A 0.079±0.00 N/A N/A 0.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CM CIL_0006CM_0002 CGP 2:65088339-65364034
CIL_0006CP CIL_0006CP_0002 CGP 2:65316430-65567627

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040257 slc38a11 solute carrier family 38, member 11 protein_coding Danio_rerio
ENSDARG00000089280 slc38a11 solute carrier family 38, member 11 protein_coding Danio_rerio
ENSG00000169507 SLC38A11 solute carrier family 38, member 11 protein_coding Homo_sapiens

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