C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169507-ENSG00000153253 CGP 9606 2:164896186-165204067
GeneTranscriptPositionBiotype
ENSG00000153253 (SCN3A)
sodium channel, voltage-gated, type III, alpha subunit 		ENST00000283254 (SCN3A-001) 165087530-165204043 protein_coding
ENST00000360093 (SCN3A-201) 165087522-165204067 protein_coding
ENST00000409101 (SCN3A-002) 165089718-165203886 protein_coding
ENST00000440431 (SCN3A-004) 165097252-165186554 protein_coding
ENST00000453007 (SCN3A-003) 165164393-165204050 protein_coding
ENST00000465043 (SCN3A-007) 165092256-165093828 processed_transcript
ENST00000471697 (SCN3A-006) 165095511-165097614 retained_intron
ENST00000484898 (SCN3A-008) 165122800-165127792 processed_transcript
ENSG00000169507 (SLC38A11)
solute carrier family 38, member 11 		ENST00000303735 (SLC38A11-001) 164896186-164955525 protein_coding
ENST00000409058 (SLC38A11-002) 164898334-164955477 protein_coding
ENST00000409149 (SLC38A11-003) 164898329-164955486 protein_coding
ENST00000409662 (SLC38A11-009) 164898374-164955246 protein_coding
ENST00000424914 (SLC38A11-010) 164898669-164937423 protein_coding
ENST00000465898 (SLC38A11-006) 164915425-164939503 retained_intron
ENST00000470576 (SLC38A11-008) 164898608-164911940 retained_intron
ENST00000483641 (SLC38A11-007) 164898528-164912086 retained_intron
ENST00000492134 (SLC38A11-004) 164944562-164953283 retained_intron
ENST00000493887 (SLC38A11-005) 164911658-164937697 processed_transcript
ENSG00000236283 (AC013463.2)
 ENST00000431341 (AC013463.2-001) 164991984-165091293 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006CP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061171-ENSMUSG00000057182 CGP 10090 2:65316430-65567627
GeneTranscriptPositionBiotype
ENSMUSG00000057182 (Scn3a)
sodium channel, voltage-gated, type III, alpha 		ENSMUST00000066432 (Scn3a-201) 65457118-65567492 protein_coding
ENSMUST00000100069 (Scn3a-001) 65458263-65567627 protein_coding
ENSMUST00000126837 (Scn3a-002) 65524748-65529404 protein_coding
ENSMUST00000155838 (Scn3a-003) 65493125-65498599 processed_transcript
ENSMUSG00000061171 (Slc38a11)
solute carrier family 38, member 11 		ENSMUST00000112420 (Slc38a11-201) 65316633-65364026 protein_coding
ENSMUST00000124918 (Slc38a11-005) 65316715-65363463 protein_coding
ENSMUST00000127623 (Slc38a11-004) 65316430-65361401 protein_coding
ENSMUST00000141690 (Slc38a11-006) 65354796-65364030 processed_transcript
ENSMUST00000145583 (Slc38a11-003) 65352887-65363923 processed_transcript
ENSMUST00000152324 (Slc38a11-001) 65322668-65364034 protein_coding
ENSMUST00000155422 (Slc38a11-002) 65349474-65364034 processed_transcript
ENSMUST00000155962 (Slc38a11-007) 65350038-65364000 protein_coding
ENSMUSG00000086701 (Gm13595)
predicted gene 13595 		ENSMUST00000145994 (Gm13595-001) 65509265-65512605 antisense
ENSMUSG00000099184 (Mir6337)
microRNA 6337 		ENSMUST00000184194 (Mir6337-201) 65364296-65364400 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CP_0001ENSG00000153253ENST00000283254ENST00000360093ENST00000409101ENST00000440431ENST00000453007ENST00000465043ENST00000471697ENST00000484898ENSG00000169507ENST00000303735ENST00000409058ENST00000409149ENST00000409662ENST00000424914ENST00000465898ENST00000470576ENST00000483641ENST00000492134ENST00000493887ENSG00000236283ENST00000431341CIL_0006CP_0002ENSMUSG00000057182ENSMUST00000066432ENSMUST00000100069ENSMUST00000126837ENSMUST00000155838ENSMUSG00000061171ENSMUST00000112420ENSMUST00000124918ENSMUST00000127623ENSMUST00000141690ENSMUST00000145583ENSMUST00000152324ENSMUST00000155422ENSMUST00000155962ENSMUSG00000086701ENSMUST00000145994ENSMUSG00000099184ENSMUST00000184194
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CP_0001ENSG00000153253ENST00000283254ENST00000360093ENST00000409101ENST00000440431ENST00000453007ENST00000465043ENST00000471697ENST00000484898ENSG00000169507ENST00000303735ENST00000409149ENST00000424914ENST00000465898ENST00000470576ENST00000483641ENST00000492134ENST00000493887ENSG00000236283ENST00000431341CIL_0006CP_0002ENSMUSG00000057182ENSMUST00000066432ENSMUST00000100069ENSMUST00000126837ENSMUST00000155838ENSMUSG00000061171ENSMUST00000112420ENSMUST00000124918ENSMUST00000127623ENSMUST00000141690ENSMUST00000145583ENSMUST00000152324ENSMUST00000155422ENSMUST00000155962ENSMUSG00000086701ENSMUST00000145994ENSMUSG00000099184ENSMUST00000184194
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153253 ENST00000283254 N/A 0.254±0.00 1.005±0.00 2.113±0.60 N/A N/A 0.151±0.00 N/A 0.258±0.25 N/A N/A 0.032±0.02 0.014±0.01 N/A
ENST00000360093 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A
ENST00000409101 N/A N/A N/A 0.623±0.00 0.033±0.00 0.255±0.00 N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.118±0.02
ENST00000440431 0.088±0.00 N/A N/A N/A N/A N/A 0.142±0.00 0.025±0.00 N/A 0.074±0.00 0.361±0.00 0.030±0.00 N/A N/A
ENST00000453007 N/A N/A N/A 2.623±0.00 0.197±0.00 0.466±0.00 N/A N/A N/A N/A 0.706±0.00 0.127±0.00 0.010±0.00 N/A
ENST00000465043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.582±0.00
ENST00000471697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.02 1.315±0.00
ENST00000484898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A
ENSG00000169507 ENST00000303735 N/A 0.312±0.00 2.655±0.00 N/A 0.053±0.00 0.010±0.00 N/A 0.821±0.00 0.111±0.06 N/A 0.051±0.00 2.674±1.61 0.056±0.03 0.228±0.10
ENST00000409058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409149 N/A N/A N/A N/A N/A N/A 0.129±0.00 0.749±0.00 N/A N/A 0.175±0.00 N/A 0.013±0.00 0.534±0.00
ENST00000409662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424914 N/A N/A N/A 1.284±0.00 N/A N/A N/A N/A N/A 1.078±0.00 N/A N/A N/A N/A
ENST00000465898 N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A N/A N/A 0.076±0.00 N/A
ENST00000470576 N/A N/A N/A N/A 0.693±0.52 N/A N/A N/A 0.943±0.00 N/A N/A N/A N/A N/A
ENST00000483641 N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492134 N/A N/A N/A N/A 0.325±0.00 N/A N/A N/A N/A 0.877±0.00 N/A N/A 0.262±0.00 N/A
ENST00000493887 N/A N/A N/A N/A N/A 0.366±0.00 0.198±0.00 N/A N/A N/A N/A 4.728±0.00 N/A 0.182±0.00
ENSG00000236283 ENST00000431341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000057182 ENSMUST00000066432 N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.051±0.00 0.019±0.00 N/A 0.057±0.00 N/A N/A N/A
ENSMUST00000100069 0.051±0.02 0.409±0.21 0.068±0.01 6.049±1.67 0.130±0.06 0.503±0.13 0.280±0.04 0.072±0.02 0.047±0.03 6.684±1.96 0.074±0.03 0.400±0.13 0.015±0.01 0.078±0.04
ENSMUST00000126837 N/A N/A N/A N/A 0.741±0.00 N/A N/A N/A N/A N/A 0.477±0.00 N/A N/A N/A
ENSMUST00000155838 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000061171 ENSMUST00000112420 0.878±0.37 3.813±1.23 N/A 0.161±0.01 0.200±0.07 0.774±0.32 0.353±0.19 0.314±0.12 N/A 0.258±0.11 0.222±0.09 0.481±0.10 N/A 0.095±0.00
ENSMUST00000124918 N/A N/A N/A 0.343±0.00 0.470±0.26 N/A 0.326±0.12 N/A 0.006±0.00 0.435±0.21 N/A 0.302±0.06 0.014±0.00 N/A
ENSMUST00000127623 N/A N/A N/A 0.154±0.00 N/A N/A 0.134±0.02 0.092±0.03 N/A 0.366±0.00 0.164±0.05 0.358±0.17 N/A 0.033±0.00
ENSMUST00000141690 0.486±0.00 2.746±0.90 N/A N/A 0.414±0.00 1.191±0.54 N/A 0.272±0.04 N/A N/A N/A 0.764±0.39 0.034±0.00 N/A
ENSMUST00000145583 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.02 N/A 0.019±0.00 0.119±0.05 N/A 0.015±0.00
ENSMUST00000152324 N/A 1.760±0.88 N/A N/A 0.251±0.08 0.277±0.00 0.330±0.00 0.207±0.14 0.026±0.00 N/A N/A 0.743±0.35 0.028±0.00 0.027±0.00
ENSMUST00000155422 N/A 1.338±0.00 N/A N/A 0.103±0.00 N/A N/A N/A 0.007±0.01 N/A 0.014±0.00 0.280±0.00 0.013±0.00 0.015±0.00
ENSMUST00000155962 N/A N/A N/A N/A 0.673±0.30 N/A N/A 0.381±0.00 N/A N/A 0.079±0.00 N/A N/A 0.037±0.00
ENSMUSG00000086701 ENSMUST00000145994 N/A N/A N/A 0.267±0.18 N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.204±0.10
ENSMUSG00000099184 ENSMUST00000184194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.470±0.00

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