C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane anterior posterior transformation 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169762 TAPT1 9606 - 4:16160505-16227410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000405303 TAPT1-001 16160505-16226541 protein_coding
  ENST00000488714 TAPT1-016 16176151-16176790 processed_transcript
  ENST00000503858 TAPT1-017 16163252-16166872 retained_intron
  ENST00000504281 TAPT1-009 16179490-16186814 retained_intron
  ENST00000505152 TAPT1-015 16188223-16214633 processed_transcript
  ENST00000505317 TAPT1-004 16190339-16226449 retained_intron
  ENST00000505603 TAPT1-002 16163261-16226471 nonsense_mediated_decay
  ENST00000507425 TAPT1-007 16179393-16191448 retained_intron
  ENST00000507728 TAPT1-008 16166673-16175041 retained_intron
  ENST00000508886 TAPT1-010 16163368-16174548 retained_intron
  ENST00000508888 TAPT1-014 16186781-16216170 processed_transcript
  ENST00000510868 TAPT1-013 16188217-16226030 processed_transcript
  ENST00000511156 TAPT1-012 16202539-16226060 processed_transcript
  ENST00000511866 TAPT1-011 16188232-16196723 processed_transcript
  ENST00000513359 TAPT1-006 16186781-16227410 processed_transcript
  ENST00000513782 TAPT1-005 16163296-16191484 nonsense_mediated_decay
  ENST00000513833 TAPT1-018 16188275-16202582 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000405303ENST00000503858ENST00000505603ENST00000508886ENST00000513359ENST00000513782
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000405303 1.928±0.00 0.920±0.00 1.710±0.63 0.730±0.00 1.131±0.32 N/A 1.595±0.46 0.804±0.17 0.615±0.02 0.888±0.00 0.883±0.46 1.328±0.28 3.349±0.00
ENST00000503858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.971±0.00 8.469±0.00 61.071±0.00
ENST00000505603 N/A N/A 3.044±1.44 1.955±0.00 1.275±0.00 3.241±2.54 6.234±0.00 2.015±0.03 N/A 3.949±1.40 0.981±0.00 1.541±0.20 6.500±0.00
ENST00000508886 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.928±0.00 N/A N/A N/A
ENST00000513359 N/A 2.741±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513782 N/A N/A N/A N/A 1.851±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033V CIL_00033V_0003 CGP 4:15963076-16227410
CIL_00033W CIL_00033W_0003 CGP 4:16160505-16898809

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0007186 TAS G-protein coupled receptor signaling pathway
GO:0009791 IEA post-embryonic development
GO:0016021 TAS integral component of membrane
GO:0016520 TAS growth hormone-releasing hormone receptor activity
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061143 tapt1b transmembrane anterior posterior transformation 1b protein_coding Danio_rerio
ENSDARG00000073999 TAPT1 (2 of 2) transmembrane anterior posterior transformation 1 protein_coding Danio_rerio
ENSMUSG00000046985 Tapt1 transmembrane anterior posterior transformation 1 protein_coding Mus_musculus

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