C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00033W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061143-ENSDARG00000034896 CGP 7955 1:21544349-21608918
GeneTranscriptPositionBiotype
ENSDARG00000034896 (ldb2b)
LIM-domain binding factor 2b 		ENSDART00000043556 (ldb2b-001) 21579492-21608918 protein_coding
ENSDARG00000061143 (tapt1b)
transmembrane anterior posterior transformation 1b 		ENSDART00000086867 (tapt1b-001) 21544349-21577241 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00033W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000073999-ENSDARG00000019579 CGP 7955 14:49565623-49768506
GeneTranscriptPositionBiotype
ENSDARG00000019579 (ldb2a)
LIM-domain binding factor 2a 		ENSDART00000149571 (ldb2a-001) 49620147-49768506 protein_coding
ENSDARG00000073999 (TAPT1 (2 of 2))
transmembrane anterior posterior transformation 1 		ENSDART00000113285 (TAPT1 (2 of 2)-201) 49565623-49611461 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00033W_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169762-ENSG00000169744 CGP 9606 4:16160505-16898809
GeneTranscriptPositionBiotype
ENSG00000169744 (LDB2)
LIM domain binding 2 		ENST00000304523 (LDB2-001) 16501541-16898809 protein_coding
ENST00000441778 (LDB2-003) 16501541-16898594 protein_coding
ENST00000502640 (LDB2-004) 16501546-16898634 protein_coding
ENST00000503153 (LDB2-017) 16512005-16653819 processed_transcript
ENST00000503829 (LDB2-018) 16585976-16626993 processed_transcript
ENST00000504189 (LDB2-009) 16750850-16898378 processed_transcript
ENST00000504886 (LDB2-015) 16585950-16726502 processed_transcript
ENST00000506732 (LDB2-010) 16585972-16898660 protein_coding
ENST00000507464 (LDB2-005) 16502042-16595875 protein_coding
ENST00000508804 (LDB2-012) 16588709-16759375 retained_intron
ENST00000508918 (LDB2-006) 16502794-16898634 nonsense_mediated_decay
ENST00000509803 (LDB2-008) 16501544-16507227 retained_intron
ENST00000510825 (LDB2-013) 16741455-16898678 processed_transcript
ENST00000512345 (LDB2-014) 16511985-16898621 nonsense_mediated_decay
ENST00000513457 (LDB2-011) 16588710-16826560 processed_transcript
ENST00000515064 (LDB2-007) 16501541-16898562 protein_coding
ENSG00000169762 (TAPT1)
transmembrane anterior posterior transformation 1 		ENST00000405303 (TAPT1-001) 16160505-16226541 protein_coding
ENST00000488714 (TAPT1-016) 16176151-16176790 processed_transcript
ENST00000503858 (TAPT1-017) 16163252-16166872 retained_intron
ENST00000504281 (TAPT1-009) 16179490-16186814 retained_intron
ENST00000505152 (TAPT1-015) 16188223-16214633 processed_transcript
ENST00000505317 (TAPT1-004) 16190339-16226449 retained_intron
ENST00000505603 (TAPT1-002) 16163261-16226471 nonsense_mediated_decay
ENST00000507425 (TAPT1-007) 16179393-16191448 retained_intron
ENST00000507728 (TAPT1-008) 16166673-16175041 retained_intron
ENST00000508886 (TAPT1-010) 16163368-16174548 retained_intron
ENST00000508888 (TAPT1-014) 16186781-16216170 processed_transcript
ENST00000510868 (TAPT1-013) 16188217-16226030 processed_transcript
ENST00000511156 (TAPT1-012) 16202539-16226060 processed_transcript
ENST00000511866 (TAPT1-011) 16188232-16196723 processed_transcript
ENST00000513359 (TAPT1-006) 16186781-16227410 processed_transcript
ENST00000513782 (TAPT1-005) 16163296-16191484 nonsense_mediated_decay
ENST00000513833 (TAPT1-018) 16188275-16202582 nonsense_mediated_decay
ENSG00000242358 (RPS21P4)
ribosomal protein S21 pseudogene 4 		ENST00000487122 (RPS21P4-001) 16256308-16256555 processed_pseudogene
ENSG00000248851 (AC006427.2)
 ENST00000514359 (AC006427.2-001) 16307456-16308167 processed_pseudogene
ENSG00000249234 (RP11-452J21.2)
 ENST00000513586 (RP11-452J21.2-001) 16178939-16183120 antisense
ENSG00000249506 (ZEB2P1)
zinc finger E-box binding homeobox 2 pseudogene 1 		ENST00000515048 (ZEB2P1-001) 16360686-16361826 transcribed_processed_pseudogene
ENST00000572816 (ZEB2P1-002) 16360884-16397323 processed_transcript
ENSG00000263327 (TAPT1-AS1)
TAPT1 antisense RNA 1 (head to head) 		ENST00000570786 (TAPT1-AS1-002) 16227045-16258187 antisense
ENST00000573308 (TAPT1-AS1-003) 16226685-16256744 antisense
ENST00000573950 (TAPT1-AS1-004) 16227007-16320140 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00033W_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046985-ENSMUSG00000039706 CGP 10090 5:44175164-44799707
GeneTranscriptPositionBiotype
ENSMUSG00000039706 (Ldb2)
LIM domain binding 2 		ENSMUST00000070748 (Ldb2-201) 44472133-44799707 protein_coding
ENSMUSG00000046985 (Tapt1)
transmembrane anterior posterior transformation 1 		ENSMUST00000055128 (Tapt1-201) 44175164-44226606 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00033W_0001ENSDARG00000034896ENSDART00000043556ENSDARG00000061143ENSDART00000086867CIL_00033W_0002ENSDARG00000019579ENSDART00000149571ENSDARG00000073999ENSDART00000113285CIL_00033W_0003ENSG00000169744ENST00000304523ENST00000441778ENST00000502640ENST00000503153ENST00000503829ENST00000504189ENST00000504886ENST00000506732ENST00000507464ENST00000508804ENST00000508918ENST00000509803ENST00000510825ENST00000512345ENST00000513457ENST00000515064ENSG00000169762ENST00000405303ENST00000488714ENST00000503858ENST00000504281ENST00000505152ENST00000505317ENST00000505603ENST00000507425ENST00000507728ENST00000508886ENST00000508888ENST00000510868ENST00000511156ENST00000511866ENST00000513359ENST00000513782ENST00000513833ENSG00000242358ENST00000487122ENSG00000248851ENST00000514359ENSG00000249234ENST00000513586ENSG00000249506ENST00000515048ENST00000572816ENSG00000263327ENST00000570786ENST00000573308ENST00000573950CIL_00033W_0004ENSMUSG00000039706ENSMUST00000070748ENSMUSG00000046985ENSMUST00000055128
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00033W_0001ENSDARG00000034896ENSDART00000043556ENSDARG00000061143ENSDART00000086867CIL_00033W_0002ENSDARG00000019579ENSDART00000149571ENSDARG00000073999ENSDART00000113285CIL_00033W_0003ENSG00000169744ENST00000304523ENST00000441778ENST00000502640ENST00000506732ENST00000507464ENST00000508918ENST00000509803ENST00000510825ENST00000512345ENST00000513457ENST00000515064ENSG00000169762ENST00000405303ENST00000503858ENST00000505603ENST00000508886ENST00000513359ENST00000513782ENSG00000242358ENST00000487122ENSG00000248851ENST00000514359ENSG00000249234ENST00000513586ENSG00000249506ENST00000515048ENST00000572816ENSG00000263327ENST00000570786ENST00000573308ENST00000573950CIL_00033W_0004ENSMUSG00000039706ENSMUST00000070748ENSMUSG00000046985ENSMUST00000055128
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034896 ENSDART00000043556 N/A N/A N/A 6.519±5.55 N/A N/A 0.210±0.06 0.256±0.09 N/A N/A 0.443±0.00 N/A N/A N/A
ENSDARG00000061143 ENSDART00000086867 N/A N/A N/A 12.300±5.91 N/A N/A 4.668±1.82 8.277±2.13 2.818±0.00 N/A 2.373±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019579 ENSDART00000149571 N/A N/A N/A 4.850±0.00 N/A N/A 1.058±0.42 1.449±0.00 0.571±0.00 N/A 0.628±0.00 N/A N/A N/A
ENSDARG00000073999 ENSDART00000113285 N/A N/A N/A 1.854±1.07 N/A N/A 1.145±0.52 0.687±0.36 0.736±0.00 N/A 0.333±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169744 ENST00000304523 5.932±0.00 N/A N/A 7.864±2.69 1.949±0.00 3.606±0.00 1.458±0.78 N/A 1.016±0.00 17.286±0.00 N/A 1.128±0.00 N/A N/A
ENST00000441778 23.210±0.00 11.984±0.00 1.151±0.00 N/A 4.938±2.69 5.494±4.42 2.408±1.34 2.524±0.00 2.099±0.00 20.993±0.00 1.138±0.00 3.350±2.41 8.510±2.91 3.448±2.72
ENST00000502640 6.167±0.00 6.271±0.00 N/A 5.754±0.00 3.470±0.00 5.386±0.00 1.194±0.00 1.977±0.00 0.970±0.00 N/A 1.339±0.00 2.767±2.27 2.677±0.34 1.557±0.31
ENST00000503153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506732 N/A N/A 8.941±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507464 10.296±0.00 N/A N/A N/A N/A N/A 2.014±0.00 N/A N/A N/A 1.385±0.00 N/A N/A N/A
ENST00000508804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A N/A N/A
ENST00000509803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.311±0.00 N/A N/A
ENST00000510825 N/A N/A 12.228±0.00 57.312±0.00 N/A 5.292±0.00 9.192±0.00 9.728±0.00 17.322±0.00 104.613±0.00 1.424±0.00 14.442±0.00 N/A N/A
ENST00000512345 N/A N/A N/A N/A N/A 1.508±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.845±0.00 N/A N/A N/A
ENST00000515064 N/A N/A 1.631±0.00 8.072±0.15 1.843±0.00 3.885±0.00 N/A N/A N/A 9.548±0.00 1.491±0.00 5.233±0.00 4.510±2.73 1.954±0.95
ENSG00000169762 ENST00000405303 1.928±0.00 N/A 0.920±0.00 1.710±0.63 0.730±0.00 1.131±0.32 N/A 1.595±0.46 0.804±0.17 0.615±0.02 0.888±0.00 0.883±0.46 1.328±0.28 3.349±0.00
ENST00000488714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.971±0.00 8.469±0.00 61.071±0.00
ENST00000504281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505603 N/A N/A N/A 3.044±1.44 1.955±0.00 1.275±0.00 3.241±2.54 6.234±0.00 2.015±0.03 N/A 3.949±1.40 0.981±0.00 1.541±0.20 6.500±0.00
ENST00000507425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.928±0.00 N/A N/A N/A
ENST00000508888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513359 N/A N/A 2.741±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513782 N/A N/A N/A N/A N/A 1.851±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242358 ENST00000487122 0.288±0.00 N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A N/A 0.644±0.00 N/A 1.446±0.00 2.127±0.00
ENSG00000248851 ENST00000514359 N/A N/A 0.378±0.00 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249234 ENST00000513586 0.089±0.00 0.182±0.00 N/A 0.127±0.00 0.189±0.10 N/A 0.254±0.23 0.059±0.00 N/A N/A N/A N/A N/A 0.171±0.04
ENSG00000249506 ENST00000515048 N/A N/A 0.370±0.00 0.104±0.03 N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A 0.025±0.00 0.082±0.06
ENST00000572816 N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.105±0.01 0.220±0.14
ENSG00000263327 ENST00000570786 0.090±0.00 0.660±0.00 N/A 0.077±0.00 0.411±0.02 0.618±0.10 0.134±0.00 N/A 0.218±0.00 1.981±0.00 0.138±0.00 0.709±0.23 0.299±0.16 0.751±0.08
ENST00000573308 N/A N/A N/A N/A N/A N/A 0.225±0.00 N/A N/A N/A 0.191±0.00 N/A N/A N/A
ENST00000573950 N/A N/A N/A 0.058±0.00 1.647±0.00 N/A N/A N/A N/A N/A N/A 1.321±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039706 ENSMUST00000070748 7.450±4.69 7.486±1.09 2.929±0.50 6.297±3.58 7.113±1.75 2.335±0.94 2.194±0.92 7.328±2.91 1.165±0.30 37.482±3.17 0.663±0.26 6.083±3.53 0.993±0.39 0.222±0.12
ENSMUSG00000046985 ENSMUST00000055128 10.870±2.50 12.986±4.04 13.129±1.91 5.933±2.28 22.061±6.54 9.369±3.09 6.636±0.24 9.939±1.17 17.684±2.37 13.829±2.60 14.629±1.39 11.579±4.46 8.288±3.15 8.345±3.53

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