C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170166 HOXD4 9606 + 2:176151222-176153226 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306324 HOXD4-001 176151222-176153226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartLiverLungMusclePlacentaENST00000306324
Transcript ID Adipose Bladder Brain Colon Heart Liver Lung Muscle Placenta
ENST00000306324 0.561±0.00 2.684±0.00 0.028±0.00 1.337±0.00 0.093±0.00 0.029±0.01 0.138±0.00 0.430±0.00 0.071±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017M CIL_00017M_0001 CGP 2:176129694-176173102

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059276 hoxd4a homeo box D4a protein_coding Danio_rerio
ENSMUSG00000101174 Hoxd4 homeobox D4 protein_coding Mus_musculus

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