C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306324 HOXD4-001 ENSG00000170166 9606 + 2:176151222-176153226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartLiverLungMusclePlacentaENST00000306324
Transcript ID Adipose Bladder Brain Colon Heart Liver Lung Muscle Placenta
ENST00000306324 0.561±0.00 2.684±0.00 0.028±0.00 1.337±0.00 0.093±0.00 0.029±0.01 0.138±0.00 0.430±0.00 0.071±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00090A CIL_00090A_0001 VISTA 2:175589301-176190657
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017M CIL_00017M_0001 CGP 2:176129694-176173102

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0 1618
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0 1557
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0 874
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 0 604
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0 237
ENSMUST00000049241 Hoxb4-001 protein_coding Mus_musculus 8.40779e-45 185
ENSMUST00000048715 Hoxa7-201 protein_coding Mus_musculus 3e-25 121
ENSMUST00000134367 Hoxa7-004 protein_coding Mus_musculus 3e-25 121
ENSMUST00000153280 Hoxa7-002 nonsense_mediated_decay Mus_musculus 3e-25 121
ENSMUST00000062829 Hoxa6-001 protein_coding Mus_musculus 0.000000000000003 88
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0.000000003 68
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0.000000003 68
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 0.000000003 68
ENSMUST00000057054 Meox1-001 protein_coding Mus_musculus 0.000000003 68
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 0.000002 58
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 0.000002 58
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 0.000002 58
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 0.000002 58
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 0.000002 58

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