C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET domain and mariner transposase fusion gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170364 SETMAR 9606 + 3:4303304-4317567 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358065 SETMAR-001 4303304-4317567 protein_coding
  ENST00000358950 SETMAR-003 4303608-4316536 protein_coding
  ENST00000413809 SETMAR-007 4303332-4317265 nonsense_mediated_decay
  ENST00000425046 SETMAR-006 4303337-4317265 nonsense_mediated_decay
  ENST00000425863 SETMAR-008 4303371-4317265 protein_coding
  ENST00000430981 SETMAR-002 4303361-4314402 protein_coding
  ENST00000462115 SETMAR-005 4303627-4313101 processed_transcript
  ENST00000490691 SETMAR-010 4303613-4316412 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358065ENST00000358950ENST00000413809ENST00000425046ENST00000425863ENST00000430981
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358065 1.064±0.00 N/A 0.587±0.00 0.179±0.00 0.836±0.00 0.632±0.25 0.229±0.13 1.398±0.47 0.270±0.00 0.572±0.10 0.753±0.00 1.388±0.67 0.563±0.23 0.787±0.19
ENST00000358950 N/A N/A N/A N/A N/A 0.918±0.00 0.287±0.00 N/A N/A N/A N/A 1.868±0.00 N/A N/A
ENST00000413809 N/A 1.175±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.617±0.00 N/A N/A 0.723±0.00
ENST00000425046 1.538±0.00 7.683±0.00 0.680±0.00 3.230±1.51 6.276±3.51 3.190±1.78 1.336±1.17 5.570±0.00 2.163±0.21 2.326±1.24 2.406±0.42 7.044±3.42 3.645±0.19 3.614±1.24
ENST00000425863 N/A N/A N/A N/A N/A N/A 0.496±0.15 N/A 0.567±0.00 N/A N/A 1.089±0.79 N/A N/A
ENST00000430981 N/A 0.831±0.00 N/A 0.416±0.00 N/A 0.991±0.00 0.183±0.00 N/A 1.473±0.00 1.398±0.00 N/A 1.023±0.62 N/A 1.137±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050L CIL_00050L_0001 CGP 3:3799437-4317567

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000729 IDA DNA double-strand break processing
GO:0000737 IDA DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0004519 IDA endonuclease activity
GO:0004803 TAS:IEA transposase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IC:IEA nucleus
GO:0006303 IMP double-strand break repair via nonhomologous end joining
GO:0006313 TAS:IEA transposition, DNA-mediated
GO:0008270 IEA zinc ion binding
GO:0015074 IEA DNA integration
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035861 IDA site of double-strand break
GO:0042803 IPI protein homodimerization activity
GO:0043566 IDA structure-specific DNA binding
GO:0071157 IMP negative regulation of cell cycle arrest
GO:2001034 IDA positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 IDA negative regulation of chromosome organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074836 setmar SET domain without mariner transposase fusion protein_coding Danio_rerio
ENSMUSG00000034639 Setmar SET domain without mariner transposase fusion protein_coding Mus_musculus

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