C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain and mariner transposase fusion gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358065 SETMAR-001 ENSG00000170364 9606 + 3:4303304-4317567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358065
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358065 1.064±0.00 0.587±0.00 0.179±0.00 0.836±0.00 0.632±0.25 0.229±0.13 1.398±0.47 0.270±0.00 0.572±0.10 0.753±0.00 1.388±0.67 0.563±0.23 0.787±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050L CIL_00050L_0001 CGP 3:3799437-4317567

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000729 IDA DNA double-strand break processing
GO:0000737 IDA DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0004519 IDA endonuclease activity
GO:0004803 TAS:IEA transposase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IC:IEA nucleus
GO:0006303 IMP double-strand break repair via nonhomologous end joining
GO:0006313 TAS:IEA transposition, DNA-mediated
GO:0008270 IEA zinc ion binding
GO:0015074 IEA DNA integration
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035861 IDA site of double-strand break
GO:0042803 IPI protein homodimerization activity
GO:0043566 IDA structure-specific DNA binding
GO:0071157 IMP negative regulation of cell cycle arrest
GO:2001034 IDA positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 IDA negative regulation of chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049246 Setmar-001 protein_coding Mus_musculus 0 706

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