C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor, X-box binding-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381538 NFXL1-001 ENSG00000170448 9606 - 4:47847240-47914616 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381538 0.852±0.00 1.165±0.00 0.484±0.00 0.705±0.37 0.752±0.00 1.110±0.79 1.804±0.46 0.841±0.00 0.893±0.00 1.001±0.00 1.615±0.10 0.876±0.10 4.569±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0001 VISTA 4:47524449-48126035
CIL_0001MZ CIL_0001MZ_0001 CGP 4:47593998-47914667

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087216 Nfxl1-001 protein_coding Mus_musculus 0 3190
ENSMUST00000135318 Nfxl1-002 nonsense_mediated_decay Mus_musculus 0 1676
ENSMUST00000074948 Nfxl1-004 protein_coding Mus_musculus 0 1066
ENSMUST00000146761 Nfxl1-003 retained_intron Mus_musculus 0 558
ENSMUST00000134452 Nfxl1-005 retained_intron Mus_musculus 0 551
ENSMUST00000153882 Nfxl1-007 retained_intron Mus_musculus 0 477

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