C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DENN/MADD domain containing 5B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170456 DENND5B 9606 - 12:31382223-31591097 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354285 DENND5B-002 31432375-31591012 protein_coding
  ENST00000389082 DENND5B-001 31382223-31591097 protein_coding
  ENST00000536562 DENND5B-003 31387393-31590442 protein_coding
  ENST00000537061 DENND5B-008 31424569-31426751 retained_intron
  ENST00000544698 DENND5B-006 31480129-31590999 nonsense_mediated_decay
  ENST00000545147 DENND5B-007 31460239-31591018 processed_transcript
  ENST00000546299 DENND5B-004 31451702-31495902 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354285ENST00000389082ENST00000536562ENST00000537061ENST00000546299
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354285 N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A 0.613±0.00 0.466±0.00 N/A N/A N/A
ENST00000389082 1.254±0.00 1.036±0.00 0.665±0.00 2.489±1.58 1.300±0.00 1.129±0.00 1.644±0.76 0.465±0.00 1.026±0.60 N/A 0.504±0.42 2.371±1.97 0.300±0.11 4.072±0.03
ENST00000536562 N/A N/A 1.091±0.00 4.691±0.00 N/A 0.838±0.00 2.154±0.00 3.585±0.00 1.128±0.00 0.424±0.00 0.621±0.00 0.900±0.00 0.276±0.00 6.466±4.22
ENST00000537061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.721±0.00 1.357±0.00 36.986±0.00
ENST00000546299 1.536±0.00 N/A N/A N/A N/A 1.319±0.00 N/A N/A N/A 1.511±0.00 N/A 0.808±0.00 0.650±0.12 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DK CIL_0003DK_0002 CGP 12:31280584-31591097

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016020 IBA membrane
GO:0016021 IEA integral component of membrane
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003789 dennd5b DENN/MADD domain containing 5B protein_coding Danio_rerio
ENSMUSG00000030313 Dennd5b DENN/MADD domain containing 5B protein_coding Mus_musculus

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