C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032653-ENSDARG00000003789 CGP 7955 4:15700129-15775162
GeneTranscriptPositionBiotype
ENSDARG00000003789 (dennd5b)
DENN/MADD domain containing 5B 		ENSDART00000033053 (dennd5b-201) 15717726-15775125 protein_coding
ENSDART00000079461 (dennd5b-202) 15717726-15774960 protein_coding
ENSDART00000133837 (dennd5b-002) 15722602-15726698 protein_coding
ENSDART00000140510 (dennd5b-001) 15717726-15775162 protein_coding
ENSDART00000141119 (dennd5b-003) 15748644-15775162 protein_coding
ENSDARG00000032653 (fam60a)
family with sequence similarity 60, member A 		ENSDART00000042307 (fam60a-001) 15703630-15712892 protein_coding
ENSDART00000126608 (fam60a-201) 15700129-15709926 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003DK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139146-ENSG00000170456 CGP 9606 12:31280584-31591097
GeneTranscriptPositionBiotype
ENSG00000139146 (FAM60A)
family with sequence similarity 60, member A 		ENST00000337682 (FAM60A-001) 31280584-31326372 protein_coding
ENST00000448582 (FAM60A-003) 31280584-31298521 retained_intron
ENST00000454658 (FAM60A-004) 31282062-31324162 protein_coding
ENST00000536836 (FAM60A-005) 31303495-31326128 processed_transcript
ENST00000539004 (FAM60A-006) 31287737-31327058 protein_coding
ENST00000539409 (FAM60A-002) 31280584-31326116 protein_coding
ENST00000542983 (FAM60A-007) 31282688-31326199 protein_coding
ENST00000543615 (FAM60A-008) 31287760-31325494 protein_coding
ENST00000544921 (FAM60A-009) 31282639-31298175 nonsense_mediated_decay
ENSG00000170456 (DENND5B)
DENN/MADD domain containing 5B 		ENST00000354285 (DENND5B-002) 31432375-31591012 protein_coding
ENST00000389082 (DENND5B-001) 31382223-31591097 protein_coding
ENST00000536562 (DENND5B-003) 31387393-31590442 protein_coding
ENST00000537061 (DENND5B-008) 31424569-31426751 retained_intron
ENST00000544698 (DENND5B-006) 31480129-31590999 nonsense_mediated_decay
ENST00000545147 (DENND5B-007) 31460239-31591018 processed_transcript
ENST00000546299 (DENND5B-004) 31451702-31495902 protein_coding
ENSG00000203437 (RP11-820K3.3)
 ENST00000366255 (RP11-820K3.3-001) 31465062-31465842 processed_pseudogene
ENSG00000225349 (RP11-820K3.2)
 ENST00000452932 (RP11-820K3.2-001) 31534715-31535247 processed_pseudogene
ENSG00000255867 (DENND5B-AS1)
DENND5B antisense RNA 1 		ENST00000536397 (DENND5B-AS1-002) 31589923-31615351 antisense
ENST00000537346 (DENND5B-AS1-001) 31591312-31615666 antisense
ENSG00000256159 (RP11-820K3.4)
 ENST00000544433 (RP11-820K3.4-001) 31477506-31477987 processed_pseudogene
ENSG00000256232 (RP11-771K4.1)
 ENST00000541749 (RP11-771K4.1-001) 31363481-31369301 lincRNA
ENSG00000275769 (RP11-771K4.3)
 ENST00000621354 (RP11-771K4.3-001) 31443792-31444208 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003DK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039985-ENSMUSG00000030313 CGP 10090 6:148921035-149101680
GeneTranscriptPositionBiotype
ENSMUSG00000030313 (Dennd5b)
DENN/MADD domain containing 5B 		ENSMUST00000111557 (Dennd5b-001) 148988071-149101680 protein_coding
ENSMUST00000127727 (Dennd5b-003) 149068580-149101584 protein_coding
ENSMUST00000129539 (Dennd5b-005) 149013850-149017188 retained_intron
ENSMUST00000145555 (Dennd5b-004) 149068557-149081295 protein_coding
ENSMUST00000150436 (Dennd5b-002) 149013988-149101538 retained_intron
ENSMUSG00000039985 (Fam60a)
family with sequence similarity 60, member A 		ENSMUST00000054080 (Fam60a-001) 148921035-148946467 protein_coding
ENSMUST00000081956 (Fam60a-002) 148921057-148944826 protein_coding
ENSMUST00000111562 (Fam60a-007) 148922713-148944812 protein_coding
ENSMUST00000127063 (Fam60a-003) 148944390-148946443 processed_transcript
ENSMUST00000132696 (Fam60a-006) 148926051-148946155 protein_coding
ENSMUST00000139355 (Fam60a-005) 148928580-148946356 protein_coding
ENSMUST00000143963 (Fam60a-008) 148932503-148946390 retained_intron
ENSMUST00000146457 (Fam60a-004) 148930619-148946415 protein_coding
ENSMUSG00000065198 (Gm23462)
predicted gene, 23462 		ENSMUST00000083264 (Gm23462-201) 149074003-149074106 snRNA
ENSMUSG00000081532 (Gm15781)
predicted gene 15781 		ENSMUST00000120216 (Gm15781-001) 149040980-149041302 processed_pseudogene
ENSMUSG00000082633 (Gm15779)
predicted gene 15779 		ENSMUST00000117470 (Gm15779-001) 149003915-149004326 processed_pseudogene
ENSMUSG00000082829 (Gm15780)
predicted gene 15780 		ENSMUST00000121283 (Gm15780-001) 149072704-149073638 processed_pseudogene
ENSMUSG00000085355 (3010003L21Rik)
RIKEN cDNA 3010003L21 gene 		ENSMUST00000047953 (3010003L21Rik-201) 148944867-148947121 lincRNA
ENSMUST00000154673 (3010003L21Rik-001) 148944867-148947129 lincRNA
ENSMUSG00000097505 (Gm26540)
predicted gene, 26540 		ENSMUST00000181858 (Gm26540-201) 148988729-148991431 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DK_0001ENSDARG00000003789ENSDART00000033053ENSDART00000079461ENSDART00000133837ENSDART00000140510ENSDART00000141119ENSDARG00000032653ENSDART00000042307ENSDART00000126608CIL_0003DK_0002ENSG00000139146ENST00000337682ENST00000448582ENST00000454658ENST00000536836ENST00000539004ENST00000539409ENST00000542983ENST00000543615ENST00000544921ENSG00000170456ENST00000354285ENST00000389082ENST00000536562ENST00000537061ENST00000544698ENST00000545147ENST00000546299ENSG00000203437ENST00000366255ENSG00000225349ENST00000452932ENSG00000255867ENST00000536397ENST00000537346ENSG00000256159ENST00000544433ENSG00000256232ENST00000541749ENSG00000275769ENST00000621354CIL_0003DK_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DK_0001ENSDARG00000003789ENSDART00000033053ENSDART00000079461ENSDART00000140510ENSDARG00000032653ENSDART00000042307ENSDART00000126608CIL_0003DK_0002ENSG00000139146ENST00000337682ENST00000448582ENST00000454658ENST00000539004ENST00000539409ENST00000542983ENST00000544921ENSG00000170456ENST00000354285ENST00000389082ENST00000536562ENST00000537061ENST00000546299ENSG00000203437ENST00000366255ENSG00000225349ENST00000452932ENSG00000255867ENST00000536397ENST00000537346ENSG00000256159ENST00000544433ENSG00000256232ENST00000541749ENSG00000275769ENST00000621354CIL_0003DK_0003ENSMUSG00000030313ENSMUST00000111557ENSMUST00000127727ENSMUST00000150436ENSMUSG00000039985ENSMUST00000054080ENSMUST00000081956ENSMUST00000111562ENSMUST00000132696ENSMUST00000143963ENSMUSG00000065198ENSMUST00000083264ENSMUSG00000081532ENSMUST00000120216ENSMUSG00000082633ENSMUST00000117470ENSMUSG00000082829ENSMUST00000121283ENSMUSG00000085355ENSMUST00000047953ENSMUST00000154673ENSMUSG00000097505ENSMUST00000181858
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003789 ENSDART00000033053 N/A N/A N/A N/A N/A N/A 6.440±0.00 N/A N/A N/A 1.456±0.00 N/A N/A N/A
ENSDART00000079461 N/A N/A N/A N/A N/A N/A 11.456±6.18 9.606±4.53 8.779±0.00 N/A N/A N/A N/A N/A
ENSDART00000133837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140510 N/A N/A N/A 21.011±3.59 N/A N/A 5.256±0.00 1.196±0.00 N/A N/A 1.633±0.00 N/A N/A N/A
ENSDART00000141119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000032653 ENSDART00000042307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENSDART00000126608 N/A N/A N/A 3.247±0.80 N/A N/A 8.252±1.07 1.877±0.04 1.237±0.00 N/A 0.163±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139146 ENST00000337682 2.016±0.00 2.525±0.00 1.640±0.00 0.409±0.00 3.653±2.41 3.754±1.31 0.301±0.00 0.605±0.00 2.532±0.00 2.653±0.11 N/A 8.051±3.66 2.919±0.49 3.105±1.22
ENST00000448582 N/A 1.731±0.00 2.650±0.00 N/A 2.779±0.00 N/A N/A N/A N/A 1.502±0.00 N/A 3.824±0.00 N/A N/A
ENST00000454658 N/A N/A 2.624±0.00 N/A N/A N/A N/A N/A 1.267±0.00 1.921±0.00 N/A N/A N/A N/A
ENST00000536836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539004 N/A N/A N/A 1.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539409 5.520±0.00 8.693±0.00 N/A 1.169±0.00 3.634±0.00 4.918±0.00 2.441±0.00 5.061±0.00 0.995±0.06 12.169±0.00 0.703±0.48 7.879±3.22 3.597±0.00 3.929±0.00
ENST00000542983 N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 N/A N/A N/A N/A N/A N/A
ENST00000543615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544921 N/A N/A N/A 0.536±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170456 ENST00000354285 N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A 0.613±0.00 0.466±0.00 N/A N/A N/A
ENST00000389082 1.254±0.00 1.036±0.00 0.665±0.00 2.489±1.58 1.300±0.00 1.129±0.00 1.644±0.76 0.465±0.00 1.026±0.60 N/A 0.504±0.42 2.371±1.97 0.300±0.11 4.072±0.03
ENST00000536562 N/A N/A 1.091±0.00 4.691±0.00 N/A 0.838±0.00 2.154±0.00 3.585±0.00 1.128±0.00 0.424±0.00 0.621±0.00 0.900±0.00 0.276±0.00 6.466±4.22
ENST00000537061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.721±0.00 1.357±0.00 36.986±0.00
ENST00000544698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546299 1.536±0.00 N/A N/A N/A N/A 1.319±0.00 N/A N/A N/A 1.511±0.00 N/A 0.808±0.00 0.650±0.12 N/A
ENSG00000203437 ENST00000366255 0.417±0.00 0.701±0.00 0.570±0.00 0.095±0.00 0.154±0.00 0.060±0.00 0.179±0.12 0.408±0.00 0.664±0.39 0.172±0.00 0.018±0.00 0.124±0.03 N/A 0.158±0.08
ENSG00000225349 ENST00000452932 0.203±0.00 0.323±0.00 0.168±0.00 0.193±0.00 0.088±0.00 0.159±0.00 0.270±0.00 0.117±0.00 0.050±0.00 0.102±0.00 0.075±0.00 0.144±0.00 N/A 0.124±0.04
ENSG00000255867 ENST00000536397 N/A 0.199±0.00 N/A 0.637±0.00 0.068±0.00 N/A 0.345±0.00 0.170±0.00 0.030±0.00 N/A N/A 0.194±0.15 N/A 0.173±0.00
ENST00000537346 0.113±0.00 0.015±0.00 N/A N/A 0.060±0.00 0.145±0.12 0.069±0.00 N/A N/A 0.108±0.00 0.250±0.00 0.048±0.03 0.244±0.07 0.203±0.00
ENSG00000256159 ENST00000544433 0.323±0.00 0.096±0.00 N/A 0.163±0.00 N/A 0.331±0.00 N/A N/A N/A N/A N/A 0.215±0.12 N/A 0.104±0.00
ENSG00000256232 ENST00000541749 N/A 0.018±0.00 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A 0.114±0.03 0.179±0.07 0.111±0.00
ENSG00000275769 ENST00000621354 0.378±0.00 0.139±0.00 N/A 0.689±0.46 0.376±0.33 0.354±0.15 0.283±0.00 0.273±0.01 0.114±0.00 0.567±0.00 0.305±0.00 0.854±0.02 0.117±0.01 0.195±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030313 ENSMUST00000111557 0.877±0.14 0.461±0.10 0.663±0.06 3.784±0.73 0.707±0.20 0.533±0.17 0.652±0.33 1.300±0.49 3.136±1.63 1.298±0.32 0.351±0.20 0.785±0.25 1.292±0.88 0.967±0.09
ENSMUST00000127727 N/A 3.167±1.11 N/A N/A 3.242±0.59 2.026±0.59 N/A 2.503±0.00 5.986±0.63 2.494±0.00 N/A 3.429±0.97 N/A N/A
ENSMUST00000129539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150436 0.849±0.24 0.540±0.08 N/A 8.378±0.00 0.991±0.33 0.765±0.22 0.559±0.13 1.185±0.09 3.201±0.77 1.069±0.00 N/A 1.515±0.70 1.107±0.26 1.741±0.47
ENSMUSG00000039985 ENSMUST00000054080 2.180±1.19 N/A 8.764±1.42 12.165±8.85 0.958±0.48 1.384±0.34 0.652±0.08 1.591±0.55 3.983±3.42 1.803±0.47 0.399±0.15 5.300±4.29 8.718±6.28 1.226±0.64
ENSMUST00000081956 0.560±0.22 2.491±0.29 N/A 0.071±0.00 0.757±0.33 1.021±0.19 N/A 0.624±0.25 0.498±0.31 2.333±0.35 N/A 2.289±0.84 1.838±0.75 0.353±0.07
ENSMUST00000111562 N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A N/A
ENSMUST00000127063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132696 N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A 0.330±0.02 N/A N/A N/A
ENSMUST00000139355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143963 N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065198 ENSMUST00000083264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 95.638±0.00 N/A N/A
ENSMUSG00000081532 ENSMUST00000120216 0.345±0.10 0.460±0.00 0.074±0.02 0.341±0.10 0.469±0.00 N/A 0.223±0.00 N/A 0.196±0.18 0.492±0.08 0.231±0.04 1.056±0.57 0.097±0.04 0.303±0.08
ENSMUSG00000082633 ENSMUST00000117470 0.308±0.16 N/A 0.110±0.04 0.512±0.17 0.481±0.27 N/A 0.237±0.17 0.500±0.31 0.489±0.31 0.507±0.05 0.300±0.18 0.694±0.49 0.250±0.09 0.194±0.05
ENSMUSG00000082829 ENSMUST00000121283 0.122±0.00 N/A 0.051±0.01 0.092±0.01 0.177±0.09 0.256±0.08 0.053±0.02 0.115±0.05 0.186±0.19 0.125±0.07 N/A 0.023±0.00 0.129±0.01 0.105±0.04
ENSMUSG00000085355 ENSMUST00000047953 1.035±0.68 2.373±0.64 N/A N/A 0.804±0.24 2.470±0.55 0.139±0.02 0.692±0.17 0.151±0.06 1.415±0.25 N/A 2.978±0.72 N/A 0.389±0.10
ENSMUST00000154673 N/A N/A N/A N/A N/A N/A N/A N/A 0.727±0.65 N/A N/A 3.048±0.00 3.239±0.00 N/A
ENSMUSG00000097505 ENSMUST00000181858 1.677±0.00 N/A 2.656±0.12 5.369±1.58 N/A N/A 1.732±0.00 2.493±0.00 2.536±0.53 N/A 1.017±0.34 3.337±0.19 2.420±1.29 N/A

Loading