C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032653-ENSDARG00000003789 CGP 7955 4:15700129-15775162
GeneTranscriptPositionBiotype
ENSDARG00000003789 (dennd5b)
DENN/MADD domain containing 5B 		ENSDART00000033053 (dennd5b-201) 15717726-15775125 protein_coding
ENSDART00000079461 (dennd5b-202) 15717726-15774960 protein_coding
ENSDART00000133837 (dennd5b-002) 15722602-15726698 protein_coding
ENSDART00000140510 (dennd5b-001) 15717726-15775162 protein_coding
ENSDART00000141119 (dennd5b-003) 15748644-15775162 protein_coding
ENSDARG00000032653 (fam60a)
family with sequence similarity 60, member A 		ENSDART00000042307 (fam60a-001) 15703630-15712892 protein_coding
ENSDART00000126608 (fam60a-201) 15700129-15709926 protein_coding
CIL_0003DK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139146-ENSG00000170456 CGP 9606 12:31280584-31591097
GeneTranscriptPositionBiotype
ENSG00000139146 (FAM60A)
family with sequence similarity 60, member A 		ENST00000337682 (FAM60A-001) 31280584-31326372 protein_coding
ENST00000448582 (FAM60A-003) 31280584-31298521 retained_intron
ENST00000454658 (FAM60A-004) 31282062-31324162 protein_coding
ENST00000536836 (FAM60A-005) 31303495-31326128 processed_transcript
ENST00000539004 (FAM60A-006) 31287737-31327058 protein_coding
ENST00000539409 (FAM60A-002) 31280584-31326116 protein_coding
ENST00000542983 (FAM60A-007) 31282688-31326199 protein_coding
ENST00000543615 (FAM60A-008) 31287760-31325494 protein_coding
ENST00000544921 (FAM60A-009) 31282639-31298175 nonsense_mediated_decay
ENSG00000170456 (DENND5B)
DENN/MADD domain containing 5B 		ENST00000354285 (DENND5B-002) 31432375-31591012 protein_coding
ENST00000389082 (DENND5B-001) 31382223-31591097 protein_coding
ENST00000536562 (DENND5B-003) 31387393-31590442 protein_coding
ENST00000537061 (DENND5B-008) 31424569-31426751 retained_intron
ENST00000544698 (DENND5B-006) 31480129-31590999 nonsense_mediated_decay
ENST00000545147 (DENND5B-007) 31460239-31591018 processed_transcript
ENST00000546299 (DENND5B-004) 31451702-31495902 protein_coding
ENSG00000203437 (RP11-820K3.3)
 ENST00000366255 (RP11-820K3.3-001) 31465062-31465842 processed_pseudogene
ENSG00000225349 (RP11-820K3.2)
 ENST00000452932 (RP11-820K3.2-001) 31534715-31535247 processed_pseudogene
ENSG00000255867 (DENND5B-AS1)
DENND5B antisense RNA 1 		ENST00000536397 (DENND5B-AS1-002) 31589923-31615351 antisense
ENST00000537346 (DENND5B-AS1-001) 31591312-31615666 antisense
ENSG00000256159 (RP11-820K3.4)
 ENST00000544433 (RP11-820K3.4-001) 31477506-31477987 processed_pseudogene
ENSG00000256232 (RP11-771K4.1)
 ENST00000541749 (RP11-771K4.1-001) 31363481-31369301 lincRNA
ENSG00000275769 (RP11-771K4.3)
 ENST00000621354 (RP11-771K4.3-001) 31443792-31444208 sense_intronic
CIL_0003DK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039985-ENSMUSG00000030313 CGP 10090 6:148921035-149101680
GeneTranscriptPositionBiotype
ENSMUSG00000030313 (Dennd5b)
DENN/MADD domain containing 5B 		ENSMUST00000111557 (Dennd5b-001) 148988071-149101680 protein_coding
ENSMUST00000127727 (Dennd5b-003) 149068580-149101584 protein_coding
ENSMUST00000129539 (Dennd5b-005) 149013850-149017188 retained_intron
ENSMUST00000145555 (Dennd5b-004) 149068557-149081295 protein_coding
ENSMUST00000150436 (Dennd5b-002) 149013988-149101538 retained_intron
ENSMUSG00000039985 (Fam60a)
family with sequence similarity 60, member A 		ENSMUST00000054080 (Fam60a-001) 148921035-148946467 protein_coding
ENSMUST00000081956 (Fam60a-002) 148921057-148944826 protein_coding
ENSMUST00000111562 (Fam60a-007) 148922713-148944812 protein_coding
ENSMUST00000127063 (Fam60a-003) 148944390-148946443 processed_transcript
ENSMUST00000132696 (Fam60a-006) 148926051-148946155 protein_coding
ENSMUST00000139355 (Fam60a-005) 148928580-148946356 protein_coding
ENSMUST00000143963 (Fam60a-008) 148932503-148946390 retained_intron
ENSMUST00000146457 (Fam60a-004) 148930619-148946415 protein_coding
ENSMUSG00000065198 (Gm23462)
predicted gene, 23462 		ENSMUST00000083264 (Gm23462-201) 149074003-149074106 snRNA
ENSMUSG00000081532 (Gm15781)
predicted gene 15781 		ENSMUST00000120216 (Gm15781-001) 149040980-149041302 processed_pseudogene
ENSMUSG00000082633 (Gm15779)
predicted gene 15779 		ENSMUST00000117470 (Gm15779-001) 149003915-149004326 processed_pseudogene
ENSMUSG00000082829 (Gm15780)
predicted gene 15780 		ENSMUST00000121283 (Gm15780-001) 149072704-149073638 processed_pseudogene
ENSMUSG00000085355 (3010003L21Rik)
RIKEN cDNA 3010003L21 gene 		ENSMUST00000047953 (3010003L21Rik-201) 148944867-148947121 lincRNA
ENSMUST00000154673 (3010003L21Rik-001) 148944867-148947129 lincRNA
ENSMUSG00000097505 (Gm26540)
predicted gene, 26540 		ENSMUST00000181858 (Gm26540-201) 148988729-148991431 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DK_0001ENSDARG00000003789ENSDART00000033053ENSDART00000079461ENSDART00000133837ENSDART00000140510ENSDART00000141119ENSDARG00000032653ENSDART00000042307ENSDART00000126608CIL_0003DK_0002ENSG00000139146ENST00000337682ENST00000448582ENST00000454658ENST00000536836ENST00000539004ENST00000539409ENST00000542983ENST00000543615ENST00000544921ENSG00000170456ENST00000354285ENST00000389082ENST00000536562ENST00000537061ENST00000544698ENST00000545147ENST00000546299ENSG00000203437ENST00000366255ENSG00000225349ENST00000452932ENSG00000255867ENST00000536397ENST00000537346ENSG00000256159ENST00000544433ENSG00000256232ENST00000541749ENSG00000275769ENST00000621354CIL_0003DK_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DK_0001ENSDARG00000003789ENSDART00000033053ENSDART00000079461ENSDART00000140510ENSDARG00000032653ENSDART00000042307ENSDART00000126608CIL_0003DK_0002ENSG00000139146ENST00000337682ENST00000448582ENST00000454658ENST00000539004ENST00000539409ENST00000542983ENST00000544921ENSG00000170456ENST00000354285ENST00000389082ENST00000536562ENST00000537061ENST00000546299ENSG00000203437ENST00000366255ENSG00000225349ENST00000452932ENSG00000255867ENST00000536397ENST00000537346ENSG00000256159ENST00000544433ENSG00000256232ENST00000541749ENSG00000275769ENST00000621354CIL_0003DK_0003ENSMUSG00000030313ENSMUST00000111557ENSMUST00000127727ENSMUST00000150436ENSMUSG00000039985ENSMUST00000054080ENSMUST00000081956ENSMUST00000111562ENSMUST00000132696ENSMUST00000143963ENSMUSG00000065198ENSMUST00000083264ENSMUSG00000081532ENSMUST00000120216ENSMUSG00000082633ENSMUST00000117470ENSMUSG00000082829ENSMUST00000121283ENSMUSG00000085355ENSMUST00000047953ENSMUST00000154673ENSMUSG00000097505ENSMUST00000181858
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003789 ENSDART00000033053 N/A N/A N/A N/A N/A N/A 6.440±0.00 N/A N/A N/A 1.456±0.00 N/A N/A N/A
ENSDART00000079461 N/A N/A N/A N/A N/A N/A 11.456±6.18 9.606±4.53 8.779±0.00 N/A N/A N/A N/A N/A
ENSDART00000133837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140510 N/A N/A N/A 21.011±3.59 N/A N/A 5.256±0.00 1.196±0.00 N/A N/A 1.633±0.00 N/A N/A N/A
ENSDART00000141119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000032653 ENSDART00000042307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENSDART00000126608 N/A N/A N/A 3.247±0.80 N/A N/A 8.252±1.07 1.877±0.04 1.237±0.00 N/A 0.163±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139146 ENST00000337682 2.016±0.00 2.525±0.00 1.640±0.00 0.409±0.00 3.653±2.41 3.754±1.31 0.301±0.00 0.605±0.00 2.532±0.00 2.653±0.11 N/A 8.051±3.66 2.919±0.49 3.105±1.22
ENST00000448582 N/A 1.731±0.00 2.650±0.00 N/A 2.779±0.00 N/A N/A N/A N/A 1.502±0.00 N/A 3.824±0.00 N/A N/A
ENST00000454658 N/A N/A 2.624±0.00 N/A N/A N/A N/A N/A 1.267±0.00 1.921±0.00 N/A N/A N/A N/A
ENST00000536836 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539004 N/A N/A N/A 1.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539409 5.520±0.00 8.693±0.00 N/A 1.169±0.00 3.634±0.00 4.918±0.00 2.441±0.00 5.061±0.00 0.995±0.06 12.169±0.00 0.703±0.48 7.879±3.22 3.597±0.00 3.929±0.00
ENST00000542983 N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 N/A N/A N/A N/A N/A N/A
ENST00000543615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544921 N/A N/A N/A 0.536±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170456 ENST00000354285 N/A N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A 0.613±0.00 0.466±0.00 N/A N/A N/A
ENST00000389082 1.254±0.00 1.036±0.00 0.665±0.00 2.489±1.58 1.300±0.00 1.129±0.00 1.644±0.76 0.465±0.00 1.026±0.60 N/A 0.504±0.42 2.371±1.97 0.300±0.11 4.072±0.03
ENST00000536562 N/A N/A 1.091±0.00 4.691±0.00 N/A 0.838±0.00 2.154±0.00 3.585±0.00 1.128±0.00 0.424±0.00 0.621±0.00 0.900±0.00 0.276±0.00 6.466±4.22
ENST00000537061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.721±0.00 1.357±0.00 36.986±0.00
ENST00000544698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546299 1.536±0.00 N/A N/A N/A N/A 1.319±0.00 N/A N/A N/A 1.511±0.00 N/A 0.808±0.00 0.650±0.12 N/A
ENSG00000203437 ENST00000366255 0.417±0.00 0.701±0.00 0.570±0.00 0.095±0.00 0.154±0.00 0.060±0.00 0.179±0.12 0.408±0.00 0.664±0.39 0.172±0.00 0.018±0.00 0.124±0.03 N/A 0.158±0.08
ENSG00000225349 ENST00000452932 0.203±0.00 0.323±0.00 0.168±0.00 0.193±0.00 0.088±0.00 0.159±0.00 0.270±0.00 0.117±0.00 0.050±0.00 0.102±0.00 0.075±0.00 0.144±0.00 N/A 0.124±0.04
ENSG00000255867 ENST00000536397 N/A 0.199±0.00 N/A 0.637±0.00 0.068±0.00 N/A 0.345±0.00 0.170±0.00 0.030±0.00 N/A N/A 0.194±0.15 N/A 0.173±0.00
ENST00000537346 0.113±0.00 0.015±0.00 N/A N/A 0.060±0.00 0.145±0.12 0.069±0.00 N/A N/A 0.108±0.00 0.250±0.00 0.048±0.03 0.244±0.07 0.203±0.00
ENSG00000256159 ENST00000544433 0.323±0.00 0.096±0.00 N/A 0.163±0.00 N/A 0.331±0.00 N/A N/A N/A N/A N/A 0.215±0.12 N/A 0.104±0.00
ENSG00000256232 ENST00000541749 N/A 0.018±0.00 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A 0.114±0.03 0.179±0.07 0.111±0.00
ENSG00000275769 ENST00000621354 0.378±0.00 0.139±0.00 N/A 0.689±0.46 0.376±0.33 0.354±0.15 0.283±0.00 0.273±0.01 0.114±0.00 0.567±0.00 0.305±0.00 0.854±0.02 0.117±0.01 0.195±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030313 ENSMUST00000111557 0.877±0.14 0.461±0.10 0.663±0.06 3.784±0.73 0.707±0.20 0.533±0.17 0.652±0.33 1.300±0.49 3.136±1.63 1.298±0.32 0.351±0.20 0.785±0.25 1.292±0.88 0.967±0.09
ENSMUST00000127727 N/A 3.167±1.11 N/A N/A 3.242±0.59 2.026±0.59 N/A 2.503±0.00 5.986±0.63 2.494±0.00 N/A 3.429±0.97 N/A N/A
ENSMUST00000129539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150436 0.849±0.24 0.540±0.08 N/A 8.378±0.00 0.991±0.33 0.765±0.22 0.559±0.13 1.185±0.09 3.201±0.77 1.069±0.00 N/A 1.515±0.70 1.107±0.26 1.741±0.47
ENSMUSG00000039985 ENSMUST00000054080 2.180±1.19 N/A 8.764±1.42 12.165±8.85 0.958±0.48 1.384±0.34 0.652±0.08 1.591±0.55 3.983±3.42 1.803±0.47 0.399±0.15 5.300±4.29 8.718±6.28 1.226±0.64
ENSMUST00000081956 0.560±0.22 2.491±0.29 N/A 0.071±0.00 0.757±0.33 1.021±0.19 N/A 0.624±0.25 0.498±0.31 2.333±0.35 N/A 2.289±0.84 1.838±0.75 0.353±0.07
ENSMUST00000111562 N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A N/A
ENSMUST00000127063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132696 N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A 0.330±0.02 N/A N/A N/A
ENSMUST00000139355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143963 N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065198 ENSMUST00000083264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 95.638±0.00 N/A N/A
ENSMUSG00000081532 ENSMUST00000120216 0.345±0.10 0.460±0.00 0.074±0.02 0.341±0.10 0.469±0.00 N/A 0.223±0.00 N/A 0.196±0.18 0.492±0.08 0.231±0.04 1.056±0.57 0.097±0.04 0.303±0.08
ENSMUSG00000082633 ENSMUST00000117470 0.308±0.16 N/A 0.110±0.04 0.512±0.17 0.481±0.27 N/A 0.237±0.17 0.500±0.31 0.489±0.31 0.507±0.05 0.300±0.18 0.694±0.49 0.250±0.09 0.194±0.05
ENSMUSG00000082829 ENSMUST00000121283 0.122±0.00 N/A 0.051±0.01 0.092±0.01 0.177±0.09 0.256±0.08 0.053±0.02 0.115±0.05 0.186±0.19 0.125±0.07 N/A 0.023±0.00 0.129±0.01 0.105±0.04
ENSMUSG00000085355 ENSMUST00000047953 1.035±0.68 2.373±0.64 N/A N/A 0.804±0.24 2.470±0.55 0.139±0.02 0.692±0.17 0.151±0.06 1.415±0.25 N/A 2.978±0.72 N/A 0.389±0.10
ENSMUST00000154673 N/A N/A N/A N/A N/A N/A N/A N/A 0.727±0.65 N/A N/A 3.048±0.00 3.239±0.00 N/A
ENSMUSG00000097505 ENSMUST00000181858 1.677±0.00 N/A 2.656±0.12 5.369±1.58 N/A N/A 1.732±0.00 2.493±0.00 2.536±0.53 N/A 1.017±0.34 3.337±0.19 2.420±1.29 N/A

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