C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal L1 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171490 RSL1D1 9606 - 16:11833850-11851585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355674 RSL1D1-002 11837966-11851544 protein_coding
  ENST00000396503 RSL1D1-003 11837718-11851580 nonsense_mediated_decay
  ENST00000570767 RSL1D1-007 11841708-11851542 nonsense_mediated_decay
  ENST00000571133 RSL1D1-001 11833850-11851585 protein_coding
  ENST00000571988 RSL1D1-009 11846560-11851045 protein_coding
  ENST00000572090 RSL1D1-004 11846501-11851508 nonsense_mediated_decay
  ENST00000573029 RSL1D1-005 11837970-11851518 nonsense_mediated_decay
  ENST00000573251 RSL1D1-011 11839849-11851516 protein_coding
  ENST00000573618 RSL1D1-006 11837955-11851518 nonsense_mediated_decay
  ENST00000573791 RSL1D1-008 11846734-11851232 protein_coding
  ENST00000574287 RSL1D1-010 11847574-11851519 retained_intron
  ENST00000574823 RSL1D1-012 11841406-11846567 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355674ENST00000396503ENST00000571133ENST00000573029ENST00000573618
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355674 N/A N/A 2.779±0.00 3.403±0.00 7.723±0.00 5.837±0.00 3.707±0.00 4.187±0.00 7.172±0.00 4.224±0.00 2.363±0.00 11.634±5.03 18.409±0.00 12.081±0.00
ENST00000396503 35.059±0.00 27.894±0.00 2.082±0.00 5.586±2.41 16.822±9.90 24.483±18.07 12.668±11.35 12.399±5.93 9.048±3.82 5.007±3.47 43.809±42.61 25.016±26.44 8.989±0.00 20.538±12.29
ENST00000571133 6.476±0.00 N/A 0.427±0.00 3.976±1.87 1.872±0.29 3.721±3.16 3.242±2.28 2.590±1.72 2.216±0.12 2.679±1.55 11.983±10.22 4.791±3.98 2.674±0.35 5.286±1.55
ENST00000573029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.555±0.00 9.944±0.00 6.844±0.00
ENST00000573618 33.978±0.00 28.473±0.00 N/A 13.425±0.00 22.668±0.00 33.555±0.00 N/A 17.981±0.00 N/A N/A N/A 56.637±0.00 N/A 35.879±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DT CIL_0007DT_0001 CGP 16:11750586-11851585
CIL_0001KD CIL_0001KD_0001 CGP 16:11833850-11916082

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0016020 IDA membrane
GO:0032880 IMP regulation of protein localization
GO:0042981 IDA regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:2000772 IDA regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055868 RSL1D1 ribosomal L1 domain containing 1 protein_coding Danio_rerio
ENSMUSG00000005846 Rsl1d1 ribosomal L1 domain containing 1 protein_coding Mus_musculus

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