C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007DT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122299-ENSG00000171490 CGP 9606 16:11750586-11851585
GeneTranscriptPositionBiotype
ENSG00000122299 (ZC3H7A)
zinc finger CCCH-type containing 7A 		ENST00000355758 (ZC3H7A-001) 11750586-11797267 protein_coding
ENST00000396516 (ZC3H7A-003) 11750586-11782552 protein_coding
ENST00000570862 (ZC3H7A-011) 11756322-11761662 retained_intron
ENST00000570918 (ZC3H7A-016) 11750591-11753162 retained_intron
ENST00000571198 (ZC3H7A-002) 11756329-11797232 protein_coding
ENST00000571405 (ZC3H7A-004) 11750595-11765561 nonsense_mediated_decay
ENST00000571676 (ZC3H7A-015) 11764965-11770841 retained_intron
ENST00000572781 (ZC3H7A-012) 11779262-11797246 protein_coding
ENST00000572870 (ZC3H7A-006) 11776758-11783034 protein_coding
ENST00000572938 (ZC3H7A-009) 11761948-11763229 retained_intron
ENST00000574995 (ZC3H7A-013) 11779290-11796952 protein_coding
ENST00000575041 (ZC3H7A-017) 11765517-11774292 nonsense_mediated_decay
ENST00000575170 (ZC3H7A-007) 11775527-11797229 processed_transcript
ENST00000575984 (ZC3H7A-010) 11750593-11759850 protein_coding
ENST00000576009 (ZC3H7A-008) 11767437-11776520 protein_coding
ENST00000576018 (ZC3H7A-014) 11779240-11796527 protein_coding
ENST00000576247 (ZC3H7A-005) 11765575-11768521 retained_intron
ENSG00000171490 (RSL1D1)
ribosomal L1 domain containing 1 		ENST00000355674 (RSL1D1-002) 11837966-11851544 protein_coding
ENST00000396503 (RSL1D1-003) 11837718-11851580 nonsense_mediated_decay
ENST00000570767 (RSL1D1-007) 11841708-11851542 nonsense_mediated_decay
ENST00000571133 (RSL1D1-001) 11833850-11851585 protein_coding
ENST00000571988 (RSL1D1-009) 11846560-11851045 protein_coding
ENST00000572090 (RSL1D1-004) 11846501-11851508 nonsense_mediated_decay
ENST00000573029 (RSL1D1-005) 11837970-11851518 nonsense_mediated_decay
ENST00000573251 (RSL1D1-011) 11839849-11851516 protein_coding
ENST00000573618 (RSL1D1-006) 11837955-11851518 nonsense_mediated_decay
ENST00000573791 (RSL1D1-008) 11846734-11851232 protein_coding
ENST00000574287 (RSL1D1-010) 11847574-11851519 retained_intron
ENST00000574823 (RSL1D1-012) 11841406-11846567 retained_intron
ENSG00000262117 (BCAR4)
breast cancer anti-estrogen resistance 4 (non-protein coding) 		ENST00000571158 (BCAR4-003) 11819842-11828845 lincRNA
ENST00000571259 (BCAR4-005) 11819829-11828828 lincRNA
ENST00000573037 (BCAR4-004) 11819830-11828832 lincRNA
ENST00000573319 (BCAR4-001) 11819850-11828811 lincRNA
ENST00000574028 (BCAR4-006) 11819948-11828818 lincRNA
ENST00000577041 (BCAR4-002) 11820151-11828811 lincRNA
ENST00000615574 (BCAR4-201) 11819920-11820285 lincRNA
ENSG00000274505 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000597717 (Metazoa_SRP.1-282) 11753666-11753948 misc_RNA
ENSG00000277369 (RP11-486I11.2)
 ENST00000615722 (RP11-486I11.2-001) 11797468-11798275 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007DT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037965-ENSMUSG00000005846 CGP 10090 16:11136592-11203331
GeneTranscriptPositionBiotype
ENSMUSG00000005846 (Rsl1d1)
ribosomal L1 domain containing 1 		ENSMUST00000119953 (Rsl1d1-001) 11192970-11203331 protein_coding
ENSMUST00000124454 (Rsl1d1-003) 11196444-11203264 retained_intron
ENSMUST00000129962 (Rsl1d1-002) 11193505-11194995 retained_intron
ENSMUSG00000037965 (Zc3h7a)
zinc finger CCCH type containing 7 A 		ENSMUST00000037633 (Zc3h7a-001) 11136592-11176393 protein_coding
ENSMUST00000125537 (Zc3h7a-007) 11161048-11175565 protein_coding
ENSMUST00000128083 (Zc3h7a-006) 11148513-11174977 protein_coding
ENSMUST00000130355 (Zc3h7a-008) 11156528-11174944 protein_coding
ENSMUST00000138185 (Zc3h7a-002) 11145210-11176100 protein_coding
ENSMUST00000138282 (Zc3h7a-015) 11137126-11140891 retained_intron
ENSMUST00000139391 (Zc3h7a-016) 11151284-11152748 retained_intron
ENSMUST00000140755 (Zc3h7a-009) 11140809-11176341 nonsense_mediated_decay
ENSMUST00000140775 (Zc3h7a-018) 11147362-11151418 retained_intron
ENSMUST00000140898 (Zc3h7a-017) 11140715-11148510 nonsense_mediated_decay
ENSMUST00000142389 (Zc3h7a-005) 11161058-11176064 protein_coding
ENSMUST00000142844 (Zc3h7a-010) 11153015-11158741 retained_intron
ENSMUST00000143121 (Zc3h7a-014) 11139043-11141907 retained_intron
ENSMUST00000143926 (Zc3h7a-013) 11145396-11147360 retained_intron
ENSMUST00000145457 (Zc3h7a-003) 11154183-11158763 retained_intron
ENSMUST00000155255 (Zc3h7a-004) 11163471-11176342 retained_intron
ENSMUST00000155340 (Zc3h7a-011) 11151677-11156076 retained_intron
ENSMUST00000155343 (Zc3h7a-012) 11150292-11151222 retained_intron
ENSMUSG00000064565 (Gm24145)
predicted gene, 24145 		ENSMUST00000082631 (Gm24145-201) 11167105-11167267 snRNA
ENSMUSG00000080790 (Gm7638)
predicted gene 7638 		ENSMUST00000121348 (Gm7638-001) 11185133-11186099 processed_pseudogene
ENSMUSG00000081052 (Gm6305)
predicted gene 6305 		ENSMUST00000121027 (Gm6305-001) 11190254-11191265 processed_pseudogene
ENSMUSG00000096959 (4930509G22Rik)
RIKEN cDNA 4930509G22 gene 		ENSMUST00000181206 (4930509G22Rik-201) 11178176-11192292 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007DT_0001ENSG00000122299ENST00000355758ENST00000570918ENST00000571198ENST00000571405ENST00000575984ENST00000576009ENST00000576247ENSG00000171490ENST00000355674ENST00000396503ENST00000571133ENST00000573029ENST00000573618ENSG00000262117ENST00000571158ENST00000571259ENST00000573037ENST00000573319ENST00000577041ENST00000615574ENSG00000274505ENST00000597717ENSG00000277369ENST00000615722CIL_0007DT_0002ENSMUSG00000005846ENSMUST00000119953ENSMUST00000124454ENSMUST00000129962ENSMUSG00000037965ENSMUST00000037633ENSMUST00000140755ENSMUST00000140775ENSMUST00000140898ENSMUST00000142844ENSMUST00000143121ENSMUST00000145457ENSMUSG00000064565ENSMUST00000082631ENSMUSG00000080790ENSMUST00000121348ENSMUSG00000081052ENSMUST00000121027ENSMUSG00000096959ENSMUST00000181206
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122299 ENST00000355758 3.610±0.00 4.601±0.00 N/A 1.858±1.05 5.081±0.00 2.515±0.00 3.084±2.28 3.005±2.62 2.806±0.69 2.849±0.26 4.323±2.92 4.548±2.78 4.431±2.12 5.245±0.00
ENST00000396516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570918 N/A N/A N/A 1.583±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571198 2.032±0.00 N/A N/A 1.268±0.00 N/A N/A N/A N/A N/A 2.266±0.00 N/A 2.257±0.00 4.026±0.00 2.047±0.00
ENST00000571405 4.322±0.00 5.644±0.00 N/A 1.745±0.00 5.239±0.00 4.374±0.00 2.212±0.00 6.121±0.00 3.040±0.00 2.768±0.00 N/A 4.271±0.66 8.812±0.00 3.790±0.14
ENST00000571676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575984 N/A 2.280±0.00 N/A N/A N/A N/A N/A 1.008±0.00 N/A N/A 0.803±0.00 1.096±0.00 N/A N/A
ENST00000576009 N/A N/A 4.397±0.00 N/A N/A N/A N/A N/A N/A N/A 2.515±0.00 N/A N/A N/A
ENST00000576018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.641±0.00 15.843±0.00 10.184±0.00
ENSG00000171490 ENST00000355674 N/A N/A 2.779±0.00 3.403±0.00 7.723±0.00 5.837±0.00 3.707±0.00 4.187±0.00 7.172±0.00 4.224±0.00 2.363±0.00 11.634±5.03 18.409±0.00 12.081±0.00
ENST00000396503 35.059±0.00 27.894±0.00 2.082±0.00 5.586±2.41 16.822±9.90 24.483±18.07 12.668±11.35 12.399±5.93 9.048±3.82 5.007±3.47 43.809±42.61 25.016±26.44 8.989±0.00 20.538±12.29
ENST00000570767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571133 6.476±0.00 N/A 0.427±0.00 3.976±1.87 1.872±0.29 3.721±3.16 3.242±2.28 2.590±1.72 2.216±0.12 2.679±1.55 11.983±10.22 4.791±3.98 2.674±0.35 5.286±1.55
ENST00000571988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.555±0.00 9.944±0.00 6.844±0.00
ENST00000573251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573618 33.978±0.00 28.473±0.00 N/A 13.425±0.00 22.668±0.00 33.555±0.00 N/A 17.981±0.00 N/A N/A N/A 56.637±0.00 N/A 35.879±0.00
ENST00000573791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000262117 ENST00000571158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.147±3.31 N/A
ENST00000571259 N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.124±4.35 N/A
ENST00000573037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.182±0.00
ENST00000573319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00
ENST00000574028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577041 N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A 0.196±0.00 N/A N/A N/A N/A
ENST00000615574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 82.032±0.00 0.180±0.00
ENSG00000274505 ENST00000597717 0.604±0.00 0.878±0.00 N/A 0.491±0.00 0.592±0.00 N/A N/A 0.981±0.00 0.057±0.00 0.487±0.00 N/A 0.317±0.00 0.285±0.00 0.175±0.00
ENSG00000277369 ENST00000615722 0.236±0.00 1.150±0.00 0.075±0.00 0.345±0.00 0.576±0.20 0.233±0.05 0.063±0.00 0.526±0.00 0.153±0.00 0.296±0.11 0.405±0.00 0.565±0.34 0.436±0.16 14.997±7.32
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005846 ENSMUST00000119953 7.267±1.96 2.030±0.34 25.263±3.20 19.608±8.06 5.194±1.94 3.231±0.52 6.730±0.56 5.447±1.39 19.661±18.06 4.668±0.41 17.431±0.90 10.561±11.91 32.904±11.80 5.067±0.90
ENSMUST00000124454 N/A N/A N/A N/A N/A 1.717±0.00 N/A N/A 2.912±0.64 N/A N/A 2.076±0.22 N/A 1.651±0.00
ENSMUST00000129962 N/A 1.782±0.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.530±0.52 N/A N/A
ENSMUSG00000037965 ENSMUST00000037633 6.673±1.85 4.168±0.31 22.865±3.38 10.466±6.86 4.720±1.85 9.338±2.01 1.419±0.50 4.571±1.80 19.172±37.53 7.934±0.72 1.496±0.49 3.563±0.81 6.299±0.90 7.263±0.63
ENSMUST00000125537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.402±0.00 N/A N/A
ENSMUST00000140775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.962±0.00 N/A N/A
ENSMUST00000140898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.798±6.12 N/A
ENSMUST00000142389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142844 20.948±2.07 6.425±0.46 N/A N/A 16.373±7.24 15.039±1.97 7.265±0.41 8.980±1.16 6.334±1.03 20.366±2.26 N/A 12.005±3.68 N/A N/A
ENSMUST00000143121 N/A N/A N/A 69.654±0.00 N/A N/A N/A N/A N/A N/A N/A 255.382±0.00 144.800±9.42 38.548±0.00
ENSMUST00000143926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145457 N/A N/A N/A N/A 2.315±0.74 N/A N/A N/A 1.683±0.00 N/A N/A 2.158±0.35 N/A N/A
ENSMUST00000155255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064565 ENSMUST00000082631 N/A N/A 3.636±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.515±0.00 N/A N/A
ENSMUSG00000080790 ENSMUST00000121348 0.325±0.25 0.517±0.00 0.380±0.20 0.118±0.08 0.612±0.14 0.468±0.12 0.049±0.02 0.172±0.07 0.163±0.11 0.278±0.00 0.087±0.00 0.606±0.31 0.292±0.25 4.897±1.93
ENSMUSG00000081052 ENSMUST00000121027 0.172±0.03 0.231±0.06 0.665±0.00 N/A 0.284±0.09 0.133±0.04 0.075±0.01 0.124±0.06 0.095±0.04 0.171±0.03 0.040±0.00 0.417±0.22 0.045±0.02 2.799±0.81
ENSMUSG00000096959 ENSMUST00000181206 0.205±0.10 0.358±0.07 0.393±0.00 0.146±0.09 0.264±0.11 0.237±0.10 0.128±0.02 0.128±0.07 0.197±0.12 0.187±0.09 0.060±0.03 0.308±0.15 0.285±0.22 3.807±2.05

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