C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin folding cofactor A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171530 TBCA 9606 - 5:77691166-77868780 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306388 TBCA-002 77691241-77776287 protein_coding
  ENST00000380377 TBCA-001 77691166-77776361 protein_coding
  ENST00000517679 TBCA-003 77691241-77715317 protein_coding
  ENST00000517881 TBCA-009 77691259-77694277 processed_transcript
  ENST00000518218 TBCA-008 77691241-77708613 retained_intron
  ENST00000518338 TBCA-004 77691267-77776261 protein_coding
  ENST00000520039 TBCA-007 77693266-77776274 protein_coding
  ENST00000520361 TBCA-006 77691248-77776293 protein_coding
  ENST00000522370 TBCA-005 77691404-77868780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306388ENST00000380377ENST00000517881ENST00000518218ENST00000518338ENST00000520361ENST00000522370
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306388 N/A N/A N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380377 21.352±0.00 20.480±0.00 5.943±0.00 22.046±0.51 9.742±0.40 12.481±6.33 9.842±3.69 28.038±0.44 13.139±0.88 8.971±1.38 3.156±0.00 57.149±35.42 61.948±18.58 37.383±1.51
ENST00000517881 24.313±0.00 25.150±0.00 N/A 37.074±0.00 34.826±0.00 41.779±0.00 17.647±0.00 76.048±0.00 32.665±0.00 16.397±0.00 N/A 51.914±18.06 41.469±2.94 50.829±0.00
ENST00000518218 N/A N/A N/A N/A N/A 2.311±0.00 N/A N/A N/A N/A N/A 2.433±0.00 N/A N/A
ENST00000518338 7.066±0.00 16.839±0.00 N/A N/A 13.374±0.00 20.346±0.00 N/A N/A 16.829±0.00 11.242±0.00 N/A 19.594±0.00 36.008±0.00 27.180±0.00
ENST00000520361 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.021±0.00 16.244±0.00 N/A N/A N/A
ENST00000522370 N/A N/A N/A 20.901±0.00 14.659±0.00 19.557±0.00 10.965±0.00 47.282±0.00 29.494±0.00 29.775±0.00 19.945±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000979 CIL_000979_0001 VISTA 5:77339400-77940441
CIL_00091A CIL_00091A_0001 VISTA 5:77345011-77945571
CIL_0008DK CIL_0008DK_0001 VISTA 5:77424780-78026683
CIL_00091B CIL_00091B_0001 VISTA 5:77543897-78144918
CIL_0007SL CIL_0007SL_0001 VISTA 5:77545919-78149307
CIL_00091C CIL_00091C_0001 VISTA 5:77551756-78152775
CIL_0007OX CIL_0007OX_0001 UCNEbase 5:77560331-77741345
CIL_00091D CIL_00091D_0001 VISTA 5:77671560-78273382

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0005737 TAS cytoplasm
GO:0005874 IEA microtubule
GO:0006457 TAS protein folding
GO:0007021 IEA tubulin complex assembly
GO:0007023 TAS post-chaperonin tubulin folding pathway
GO:0015630 IDA microtubule cytoskeleton
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051087 TAS chaperone binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016754 tbca tubulin cofactor a protein_coding Danio_rerio
ENSMUSG00000042043 Tbca tubulin cofactor A protein_coding Mus_musculus

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