C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB4B-EGLN2 readthrough (NMD candidate)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171570 RAB4B-EGLN2 9606 + 19:40778242-40808198 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000594136 RAB4B-EGLN2-003 40778271-40808198 nonsense_mediated_decay
  ENST00000596216 RAB4B-EGLN2-002 40780379-40800396 retained_intron
  ENST00000601949 RAB4B-EGLN2-001 40778242-40800443 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonOvaryPlacentaENST00000594136
Transcript ID Adipose Breast Colon Ovary Placenta
ENST00000594136 9.926±0.00 12.754±0.00 9.388±0.00 8.128±0.00 9.058±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NO CIL_0000NO_0001 CGP 19:40771648-40786685

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032593 IDA insulin-responsive compartment
GO:0046323 IMP glucose import
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012177 rab4b RAB4B, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000053291 Rab4b RAB4B, member RAS oncogene family protein_coding Mus_musculus

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