C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB4B-EGLN2 readthrough (NMD candidate)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000594136 RAB4B-EGLN2-003 ENSG00000171570 9606 + 19:40778271-40808198 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonOvaryPlacentaENST00000594136
Transcript ID Adipose Breast Colon Ovary Placenta
ENST00000594136 9.926±0.00 12.754±0.00 9.388±0.00 8.128±0.00 9.058±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NO CIL_0000NO_0001 CGP 19:40771648-40786685

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0032593 IDA insulin-responsive compartment
GO:0046323 IMP glucose import
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108382 Egln2-002 protein_coding Mus_musculus 0 1050
ENSMUST00000080058 Egln2-001 protein_coding Mus_musculus 0 1050
ENSMUST00000093040 Rab4b-001 protein_coding Mus_musculus 0 1016
ENSMUST00000154724 Gm21983-001 nonsense_mediated_decay Mus_musculus 0 745
ENSMUST00000134462 Rab4b-002 retained_intron Mus_musculus 0 745
ENSMUST00000152753 Rab4b-006 processed_transcript Mus_musculus 0 568
ENSMUST00000153511 Rab4b-003 nonsense_mediated_decay Mus_musculus 0 518
ENSMUST00000131278 Rab4b-008 processed_transcript Mus_musculus 0 379
ENSMUST00000141906 Rab4b-007 processed_transcript Mus_musculus 0 257
ENSMUST00000131420 Rab4b-004 processed_transcript Mus_musculus 4.00001e-40 171

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