C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FERM domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171877 FRMD5 9606 - 15:43870761-44195252 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000402883 FRMD5-009 43870767-44195210 protein_coding
  ENST00000417257 FRMD5-001 43870764-44195231 protein_coding
  ENST00000421674 FRMD5-003 43873275-44195193 nonsense_mediated_decay
  ENST00000449926 FRMD5-006 43873275-43924309 protein_coding
  ENST00000451277 FRMD5-010 43873535-44195252 nonsense_mediated_decay
  ENST00000458630 FRMD5-004 43873275-44195040 nonsense_mediated_decay
  ENST00000473965 FRMD5-008 43874360-43885106 retained_intron
  ENST00000479319 FRMD5-007 43901914-43909927 retained_intron
  ENST00000484674 FRMD5-005 43873275-44194446 protein_coding
  ENST00000558108 FRMD5-012 43873533-43919502 protein_coding
  ENST00000618556 FRMD5-201 43870761-43924314 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENST00000402883ENST00000417257ENST00000421674ENST00000449926ENST00000451277ENST00000473965ENST00000479319ENST00000558108ENST00000618556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000402883 0.005±0.00 N/A N/A 3.991±0.00 N/A N/A 0.005±0.00 0.019±0.00 N/A 0.116±0.00 0.018±0.01 1.047±0.50
ENST00000417257 0.018±0.00 0.100±0.00 N/A 2.170±0.95 0.125±0.00 0.446±0.00 N/A N/A N/A 0.560±0.29 0.046±0.00 N/A
ENST00000421674 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.987±0.00 N/A 1.486±0.00
ENST00000449926 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.001±0.00 N/A 1.666±0.00
ENST00000451277 N/A N/A 0.075±0.00 N/A N/A 0.185±0.00 N/A 0.018±0.00 N/A N/A 0.011±0.00 N/A
ENST00000473965 N/A N/A N/A N/A N/A N/A 0.213±0.00 0.060±0.00 0.160±0.00 N/A 0.058±0.00 N/A
ENST00000479319 N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A
ENST00000558108 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A
ENST00000618556 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_00067Y CIL_00067Y_0001 CGP 15:43826963-44195252
CIL_000687 CIL_000687_0001 CGP 15:43870761-44415758

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0019898 IEA extrinsic component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075942 FRMD5 (1 of 2) FERM domain containing 5 protein_coding Danio_rerio
ENSDARG00000079622 FRMD5 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000027238 Frmd5 FERM domain containing 5 protein_coding Mus_musculus

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