C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000687_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171877-ENSG00000166734 CGP 9606 15:43870761-44415758
GeneTranscriptPositionBiotype
ENSG00000166734 (CASC4)
cancer susceptibility candidate 4 		ENST00000299957 (CASC4-001) 44288731-44415758 protein_coding
ENST00000345795 (CASC4-002) 44288760-44415757 protein_coding
ENST00000429162 (CASC4-004) 44288738-44308536 processed_transcript
ENST00000557945 (CASC4-005) 44288731-44348918 nonsense_mediated_decay
ENST00000558735 (CASC4-007) 44289105-44332059 nonsense_mediated_decay
ENST00000558847 (CASC4-009) 44337764-44413543 protein_coding
ENST00000559037 (CASC4-008) 44328700-44346149 processed_transcript
ENST00000559151 (CASC4-010) 44406330-44409847 processed_transcript
ENST00000559222 (CASC4-006) 44288729-44337881 protein_coding
ENST00000559550 (CASC4-012) 44380864-44382229 processed_transcript
ENST00000561305 (CASC4-011) 44403051-44414761 protein_coding
ENSG00000171877 (FRMD5)
FERM domain containing 5 		ENST00000402883 (FRMD5-009) 43870767-44195210 protein_coding
ENST00000417257 (FRMD5-001) 43870764-44195231 protein_coding
ENST00000421674 (FRMD5-003) 43873275-44195193 nonsense_mediated_decay
ENST00000449926 (FRMD5-006) 43873275-43924309 protein_coding
ENST00000451277 (FRMD5-010) 43873535-44195252 nonsense_mediated_decay
ENST00000458630 (FRMD5-004) 43873275-44195040 nonsense_mediated_decay
ENST00000473965 (FRMD5-008) 43874360-43885106 retained_intron
ENST00000479319 (FRMD5-007) 43901914-43909927 retained_intron
ENST00000484674 (FRMD5-005) 43873275-44194446 protein_coding
ENST00000558108 (FRMD5-012) 43873533-43919502 protein_coding
ENST00000618556 (FRMD5-201) 43870761-43924314 protein_coding
ENSG00000185607 (ACTBP7)
actin, beta pseudogene 7 		ENST00000418351 (ACTBP7-001) 43989061-43990184 processed_pseudogene
ENSG00000224055 (GAPDHP55)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 55 		ENST00000423136 (GAPDHP55-001) 44063511-44064313 processed_pseudogene
ENSG00000227973 (PIN4P1)
protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 		ENST00000451079 (PIN4P1-001) 43875849-43876244 processed_pseudogene
ENSG00000250130 (RP11-616K22.1)
 ENST00000508195 (RP11-616K22.1-001) 44354691-44355692 processed_pseudogene
ENSG00000259499 (RP11-616K22.2)
 ENST00000559034 (RP11-616K22.2-001) 44387320-44390451 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000687_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027238-ENSMUSG00000060227 CGP 10090 2:121545529-121936220
GeneTranscriptPositionBiotype
ENSMUSG00000027238 (Frmd5)
FERM domain containing 5 		ENSMUST00000110592 (Frmd5-006) 121548307-121806992 protein_coding
ENSMUST00000110593 (Frmd5-002) 121545529-121765108 protein_coding
ENSMUST00000121219 (Frmd5-005) 121548087-121787344 protein_coding
ENSMUST00000128428 (Frmd5-004) 121548306-121807023 nonsense_mediated_decay
ENSMUST00000131092 (Frmd5-011) 121547745-121555599 protein_coding
ENSMUST00000133898 (Frmd5-007) 121545529-121586433 protein_coding
ENSMUST00000138157 (Frmd5-001) 121545529-121807087 protein_coding
ENSMUST00000142016 (Frmd5-008) 121561385-121807057 retained_intron
ENSMUST00000145075 (Frmd5-009) 121568895-121806872 nonsense_mediated_decay
ENSMUST00000153704 (Frmd5-010) 121568947-121584012 processed_transcript
ENSMUST00000153932 (Frmd5-012) 121549048-121558557 processed_transcript
ENSMUST00000155570 (Frmd5-003) 121548304-121765108 protein_coding
ENSMUSG00000060227 (Casc4)
cancer susceptibility candidate 4 		ENSMUST00000078752 (Casc4-001) 121866970-121936220 protein_coding
ENSMUST00000089912 (Casc4-002) 121867130-121935866 protein_coding
ENSMUST00000089915 (Casc4-003) 121867130-121935907 protein_coding
ENSMUST00000110586 (Casc4-201) 121866970-121936205 protein_coding
ENSMUST00000126256 (Casc4-004) 121867705-121933697 processed_transcript
ENSMUST00000127475 (Casc4-005) 121867129-121900208 retained_intron
ENSMUST00000135416 (Casc4-006) 121867130-121906206 retained_intron
ENSMUST00000136023 (Casc4-007) 121898807-121933662 protein_coding
ENSMUSG00000081264 (Gm14021)
predicted gene 14021 		ENSMUST00000117683 (Gm14021-001) 121700765-121701725 processed_pseudogene
ENSMUSG00000084244 (Gm14020)
predicted gene 14020 		ENSMUST00000118165 (Gm14020-001) 121718530-121719191 processed_pseudogene
ENSMUSG00000086913 (Gm14019)
predicted gene 14019 		ENSMUST00000131514 (Gm14019-001) 121865781-121866717 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000687_0001ENSG00000166734ENST00000299957ENST00000345795ENST00000558847ENST00000559151ENST00000559222ENSG00000171877ENST00000402883ENST00000417257ENST00000421674ENST00000449926ENST00000451277ENST00000473965ENST00000479319ENST00000558108ENST00000618556ENSG00000185607ENST00000418351ENSG00000224055ENST00000423136ENSG00000227973ENST00000451079ENSG00000250130ENST00000508195ENSG00000259499ENST00000559034CIL_000687_0002ENSMUSG00000027238ENSMUST00000110592ENSMUST00000110593ENSMUST00000121219ENSMUST00000128428ENSMUST00000131092ENSMUST00000133898ENSMUST00000138157ENSMUST00000142016ENSMUST00000145075ENSMUST00000153932ENSMUST00000155570ENSMUSG00000060227ENSMUST00000078752ENSMUST00000089912ENSMUST00000089915ENSMUST00000110586ENSMUST00000126256ENSMUST00000135416ENSMUST00000136023ENSMUSG00000081264ENSMUST00000117683ENSMUSG00000084244ENSMUST00000118165ENSMUSG00000086913ENSMUST00000131514
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166734 ENST00000299957 13.269±0.00 N/A 7.042±0.00 16.013±2.25 6.200±0.96 10.476±3.22 4.643±0.28 11.064±1.22 8.764±0.97 13.737±1.48 5.290±2.80 11.408±1.76 3.681±1.29 9.817±4.74
ENST00000345795 5.695±0.00 6.413±0.00 N/A N/A 7.236±2.45 7.029±0.00 2.341±0.00 N/A 2.582±0.00 6.959±0.00 N/A 6.368±2.42 4.101±0.96 8.763±0.00
ENST00000429162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558847 N/A N/A 14.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559151 0.195±0.00 1.008±0.00 0.054±0.00 0.411±0.26 0.432±0.22 0.525±0.16 0.413±0.33 0.623±0.00 0.400±0.16 0.304±0.24 0.261±0.15 0.215±0.10 N/A 0.290±0.24
ENST00000559222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.493±0.00 29.897±0.00 43.456±0.00
ENST00000559550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171877 ENST00000402883 0.005±0.00 N/A N/A 3.991±0.00 N/A N/A N/A N/A 0.005±0.00 0.019±0.00 N/A 0.116±0.00 0.018±0.01 1.047±0.50
ENST00000417257 0.018±0.00 0.100±0.00 N/A 2.170±0.95 0.125±0.00 0.446±0.00 N/A N/A N/A N/A N/A 0.560±0.29 0.046±0.00 N/A
ENST00000421674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.987±0.00 N/A 1.486±0.00
ENST00000449926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.001±0.00 N/A 1.666±0.00
ENST00000451277 N/A N/A 0.075±0.00 N/A N/A 0.185±0.00 N/A N/A N/A 0.018±0.00 N/A N/A 0.011±0.00 N/A
ENST00000458630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473965 N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 0.060±0.00 0.160±0.00 N/A 0.058±0.00 N/A
ENST00000479319 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A
ENST00000484674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558108 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A
ENST00000618556 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A
ENSG00000185607 ENST00000418351 0.074±0.00 0.082±0.00 N/A 0.330±0.07 0.047±0.00 0.103±0.00 0.018±0.00 0.130±0.00 0.037±0.00 0.041±0.00 0.035±0.00 0.095±0.08 N/A 0.197±0.08
ENSG00000224055 ENST00000423136 0.017±0.00 N/A N/A N/A 0.081±0.04 N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A 0.094±0.06
ENSG00000227973 ENST00000451079 N/A 0.039±0.00 N/A 0.439±0.00 0.039±0.00 N/A N/A 0.077±0.00 N/A N/A N/A 0.140±0.03 N/A 0.244±0.00
ENSG00000250130 ENST00000508195 N/A 0.259±0.00 0.210±0.00 0.205±0.15 0.453±0.44 0.566±0.55 0.093±0.03 0.131±0.06 0.215±0.19 0.303±0.00 0.176±0.00 0.303±0.23 0.183±0.09 0.938±0.76
ENSG00000259499 ENST00000559034 0.068±0.00 0.063±0.00 N/A 0.172±0.06 N/A 0.079±0.00 0.147±0.13 0.073±0.00 N/A N/A N/A 0.062±0.03 0.090±0.04 0.091±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027238 ENSMUST00000110592 0.099±0.00 22.477±6.26 0.404±0.01 7.785±0.00 0.089±0.00 0.283±0.09 N/A 0.142±0.07 0.067±0.03 0.851±0.29 N/A 14.360±2.72 0.127±0.00 N/A
ENSMUST00000110593 N/A N/A N/A N/A 0.105±0.05 0.194±0.00 N/A N/A N/A N/A 0.011±0.00 8.946±0.00 N/A N/A
ENSMUST00000121219 0.125±0.03 N/A N/A 7.433±0.78 0.082±0.03 0.069±0.00 17.395±0.79 0.032±0.00 0.022±0.01 N/A 0.022±0.00 10.724±1.96 0.053±0.01 N/A
ENSMUST00000128428 0.036±0.00 18.825±6.31 N/A N/A 0.183±0.04 0.158±0.11 N/A N/A 0.062±0.00 N/A N/A 13.605±1.96 0.096±0.00 N/A
ENSMUST00000131092 N/A N/A N/A N/A 0.245±0.00 0.379±0.07 N/A N/A 0.054±0.03 N/A 0.055±0.02 N/A 0.227±0.00 N/A
ENSMUST00000133898 0.062±0.01 N/A N/A N/A 0.187±0.18 0.074±0.02 10.059±1.08 0.035±0.00 0.019±0.00 N/A 0.026±0.00 8.689±3.81 0.077±0.07 N/A
ENSMUST00000138157 N/A 24.206±7.06 N/A 12.999±1.28 N/A 0.102±0.03 N/A 0.055±0.02 0.050±0.01 N/A N/A 15.725±4.56 0.060±0.01 N/A
ENSMUST00000142016 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.020±0.00 N/A N/A N/A
ENSMUST00000145075 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.037±0.00 N/A 0.026±0.00 N/A
ENSMUST00000153704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153932 N/A N/A N/A N/A N/A 0.335±0.00 N/A N/A 0.099±0.00 N/A N/A N/A N/A N/A
ENSMUST00000155570 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A 0.032±0.02 N/A 0.031±0.00 N/A N/A N/A
ENSMUSG00000060227 ENSMUST00000078752 3.099±0.17 N/A 3.053±0.78 5.337±1.39 0.923±0.68 1.367±0.50 0.872±0.22 2.822±1.16 1.603±0.91 7.265±1.12 1.318±0.11 4.224±1.74 1.913±0.83 5.660±1.02
ENSMUST00000089912 0.342±0.04 N/A 1.144±0.00 7.144±3.09 N/A 1.374±0.00 0.784±0.00 2.026±0.75 0.722±0.00 4.097±1.32 0.368±0.15 4.221±0.41 0.905±0.21 3.100±0.36
ENSMUST00000089915 N/A N/A N/A N/A N/A 1.262±0.00 0.242±0.00 N/A 0.294±0.00 N/A N/A 6.195±0.00 N/A N/A
ENSMUST00000110586 1.616±1.27 8.305±1.81 1.195±0.34 3.498±0.06 1.027±0.31 3.290±1.88 0.320±0.01 3.913±0.70 1.029±0.66 3.221±0.81 0.178±0.00 10.677±2.81 2.773±1.05 1.834±0.13
ENSMUST00000126256 N/A N/A N/A 8.929±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135416 5.881±4.04 29.761±9.63 N/A N/A 3.091±1.45 5.219±1.60 1.142±0.00 5.364±1.12 0.329±0.10 24.269±6.12 N/A 19.676±4.35 N/A 8.136±1.87
ENSMUST00000136023 N/A N/A N/A 15.670±0.00 N/A N/A N/A N/A N/A N/A N/A 14.170±2.64 4.284±0.33 16.207±0.00
ENSMUSG00000081264 ENSMUST00000117683 0.084±0.04 0.308±0.18 0.009±0.00 0.251±0.22 0.092±0.00 N/A N/A N/A N/A N/A N/A 0.422±0.31 0.018±0.00 0.137±0.05
ENSMUSG00000084244 ENSMUST00000118165 N/A 0.463±0.18 N/A N/A N/A 0.149±0.00 N/A N/A N/A N/A N/A 0.749±0.60 0.018±0.00 0.076±0.02
ENSMUSG00000086913 ENSMUST00000131514 N/A N/A N/A 0.030±0.00 N/A N/A 0.137±0.00 0.128±0.00 0.025±0.00 N/A N/A N/A N/A 0.277±0.15

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