C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FERM domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027238 Frmd5 10090 - 2:121545529-121807087 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110592 Frmd5-006 121548307-121806992 protein_coding
  ENSMUST00000110593 Frmd5-002 121545529-121765108 protein_coding
  ENSMUST00000121219 Frmd5-005 121548087-121787344 protein_coding
  ENSMUST00000128428 Frmd5-004 121548306-121807023 nonsense_mediated_decay
  ENSMUST00000131092 Frmd5-011 121547745-121555599 protein_coding
  ENSMUST00000133898 Frmd5-007 121545529-121586433 protein_coding
  ENSMUST00000138157 Frmd5-001 121545529-121807087 protein_coding
  ENSMUST00000142016 Frmd5-008 121561385-121807057 retained_intron
  ENSMUST00000145075 Frmd5-009 121568895-121806872 nonsense_mediated_decay
  ENSMUST00000153704 Frmd5-010 121568947-121584012 processed_transcript
  ENSMUST00000153932 Frmd5-012 121549048-121558557 processed_transcript
  ENSMUST00000155570 Frmd5-003 121548304-121765108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000110592ENSMUST00000110593ENSMUST00000121219ENSMUST00000128428ENSMUST00000131092ENSMUST00000133898ENSMUST00000138157ENSMUST00000142016ENSMUST00000145075ENSMUST00000153932ENSMUST00000155570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000110592 0.099±0.00 22.477±6.26 0.404±0.01 7.785±0.00 0.089±0.00 0.283±0.09 N/A 0.142±0.07 0.067±0.03 0.851±0.29 N/A 14.360±2.72 0.127±0.00
ENSMUST00000110593 N/A N/A N/A N/A 0.105±0.05 0.194±0.00 N/A N/A N/A N/A 0.011±0.00 8.946±0.00 N/A
ENSMUST00000121219 0.125±0.03 N/A N/A 7.433±0.78 0.082±0.03 0.069±0.00 17.395±0.79 0.032±0.00 0.022±0.01 N/A 0.022±0.00 10.724±1.96 0.053±0.01
ENSMUST00000128428 0.036±0.00 18.825±6.31 N/A N/A 0.183±0.04 0.158±0.11 N/A N/A 0.062±0.00 N/A N/A 13.605±1.96 0.096±0.00
ENSMUST00000131092 N/A N/A N/A N/A 0.245±0.00 0.379±0.07 N/A N/A 0.054±0.03 N/A 0.055±0.02 N/A 0.227±0.00
ENSMUST00000133898 0.062±0.01 N/A N/A N/A 0.187±0.18 0.074±0.02 10.059±1.08 0.035±0.00 0.019±0.00 N/A 0.026±0.00 8.689±3.81 0.077±0.07
ENSMUST00000138157 N/A 24.206±7.06 N/A 12.999±1.28 N/A 0.102±0.03 N/A 0.055±0.02 0.050±0.01 N/A N/A 15.725±4.56 0.060±0.01
ENSMUST00000142016 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A 0.020±0.00 N/A N/A
ENSMUST00000145075 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.037±0.00 N/A 0.026±0.00
ENSMUST00000153932 N/A N/A N/A N/A N/A 0.335±0.00 N/A N/A 0.099±0.00 N/A N/A N/A N/A
ENSMUST00000155570 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A 0.032±0.02 N/A 0.031±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_00067Y CIL_00067Y_0002 CGP 2:121506723-121807087
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0019898 IEA extrinsic component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075942 FRMD5 (1 of 2) FERM domain containing 5 protein_coding Danio_rerio
ENSDARG00000079622 FRMD5 Uncharacterized protein protein_coding Danio_rerio
ENSG00000171877 FRMD5 FERM domain containing 5 protein_coding Homo_sapiens

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