C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417257 FRMD5-001 ENSG00000171877 9606 - 15:43870764-44195231 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonOvaryPlacentaENST00000417257
Transcript ID Adipose Adrenal Brain Breast Colon Ovary Placenta
ENST00000417257 0.018±0.00 0.100±0.00 2.170±0.95 0.125±0.00 0.446±0.00 0.560±0.29 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_00067Y CIL_00067Y_0001 CGP 15:43826963-44195252
CIL_000687 CIL_000687_0001 CGP 15:43870761-44415758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0019898 IEA extrinsic component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110592 Frmd5-006 protein_coding Mus_musculus 0 2944
ENSMUST00000121219 Frmd5-005 protein_coding Mus_musculus 0 2726
ENSMUST00000138157 Frmd5-001 protein_coding Mus_musculus 0 2178
ENSMUST00000155570 Frmd5-003 protein_coding Mus_musculus 0 1890
ENSMUST00000110593 Frmd5-002 protein_coding Mus_musculus 0 1888
ENSMUST00000133898 Frmd5-007 protein_coding Mus_musculus 0 1692
ENSMUST00000142016 Frmd5-008 retained_intron Mus_musculus 0 1170
ENSMUST00000128428 Frmd5-004 nonsense_mediated_decay Mus_musculus 0 1158
ENSDART00000113280 FRMD5 (1 of 2)-201 protein_coding Danio_rerio 0 950
ENSMUST00000153932 Frmd5-012 processed_transcript Mus_musculus 0 821
ENSMUST00000145075 Frmd5-009 nonsense_mediated_decay Mus_musculus 0 730
ENSMUST00000131092 Frmd5-011 protein_coding Mus_musculus 0 699
ENSDART00000135133 FRMD5 (1 of 2)-001 protein_coding Danio_rerio 0 388
ENSMUST00000153704 Frmd5-010 processed_transcript Mus_musculus 0 370

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