C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 48
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171962 LRRC48 9606 + 17:17972813-18016889 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313838 LRRC48-201 17972813-18016873 protein_coding
  ENST00000399182 LRRC48-004 17972937-18007828 protein_coding
  ENST00000399187 LRRC48-001 17972885-18016889 protein_coding
  ENST00000470048 LRRC48-007 18006880-18007934 retained_intron
  ENST00000479684 LRRC48-005 17972887-17977753 protein_coding
  ENST00000490517 LRRC48-003 17972903-18016859 retained_intron
  ENST00000496293 LRRC48-013 17994355-18004451 nonsense_mediated_decay
  ENST00000577202 LRRC48-012 17992854-17994348 processed_transcript
  ENST00000577477 LRRC48-019 18015811-18016859 retained_intron
  ENST00000579376 LRRC48-010 18007024-18007827 protein_coding
  ENST00000579977 LRRC48-016 17972962-17987961 protein_coding
  ENST00000581264 LRRC48-014 17972873-17988049 protein_coding
  ENST00000582416 LRRC48-021 17972813-17983858 protein_coding
  ENST00000583171 LRRC48-009 17992765-18016651 nonsense_mediated_decay
  ENST00000583995 LRRC48-018 18015727-18016889 processed_transcript
  ENST00000584166 LRRC48-008 17972889-18007721 protein_coding
  ENST00000585008 LRRC48-017 17972967-17973883 processed_transcript
  ENST00000585108 LRRC48-015 17972918-17988070 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverLungMuscleOvaryTestisENST00000313838ENST00000399187ENST00000490517ENST00000496293ENST00000583995ENST00000584166
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000313838 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.282±0.00 4.888±0.00
ENST00000399187 N/A N/A N/A N/A N/A N/A N/A 6.992±0.00 N/A 5.182±0.00 10.175±0.00
ENST00000490517 0.223±0.00 0.849±0.00 N/A 0.397±0.00 0.147±0.00 1.156±0.00 N/A 1.426±0.00 0.425±0.00 0.701±0.35 2.159±0.16
ENST00000496293 N/A N/A N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A N/A
ENST00000583995 N/A N/A N/A N/A N/A N/A 1.046±0.00 N/A N/A N/A N/A
ENST00000584166 N/A N/A 1.050±0.00 N/A N/A N/A N/A N/A N/A N/A 5.797±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0002 CGP 17:17843511-18016889
CIL_0000DY CIL_0000DY_0001 CGP 17:17972813-18039209

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041300 lrrc48 leucine rich repeat containing 48 protein_coding Danio_rerio
ENSMUSG00000056598 Lrrc48 leucine rich repeat containing 48 protein_coding Mus_musculus

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