C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00058R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056394-ENSDARG00000041300 CGP 7955 3:62759005-62801210
GeneTranscriptPositionBiotype
ENSDARG00000041300 (lrrc48)
leucine rich repeat containing 48 		ENSDART00000060527 (lrrc48-201) 62789246-62801210 protein_coding
ENSDARG00000056394 (TOM1L2)
target of myb1-like 2 (chicken) 		ENSDART00000097345 (TOM1L2-201) 62759005-62787959 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00058R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175662-ENSG00000171962 CGP 9606 17:17843511-18016889
GeneTranscriptPositionBiotype
ENSG00000171953 (ATPAF2)
ATP synthase mitochondrial F1 complex assembly factor 2 		ENST00000444058 (ATPAF2-015) 18021745-18039209 protein_coding
ENST00000462733 (ATPAF2-003) 18015059-18039075 nonsense_mediated_decay
ENST00000465337 (ATPAF2-009) 18020696-18021794 retained_intron
ENST00000467560 (ATPAF2-011) 18018262-18021264 retained_intron
ENST00000469327 (ATPAF2-008) 18018648-18025340 processed_transcript
ENST00000474627 (ATPAF2-001) 18018010-18039168 protein_coding
ENST00000488753 (ATPAF2-007) 18020730-18026535 retained_intron
ENST00000496852 (ATPAF2-004) 18018262-18025631 retained_intron
ENST00000497871 (ATPAF2-006) 18028111-18039201 retained_intron
ENST00000577586 (ATPAF2-012) 18027971-18039164 processed_transcript
ENST00000581698 (ATPAF2-014) 18018264-18024671 protein_coding
ENST00000584205 (ATPAF2-020) 17977409-18039168 nonsense_mediated_decay
ENST00000585101 (ATPAF2-013) 18016207-18039168 protein_coding
ENSG00000171962 (LRRC48)
leucine rich repeat containing 48 		ENST00000313838 (LRRC48-201) 17972813-18016873 protein_coding
ENST00000399182 (LRRC48-004) 17972937-18007828 protein_coding
ENST00000399187 (LRRC48-001) 17972885-18016889 protein_coding
ENST00000470048 (LRRC48-007) 18006880-18007934 retained_intron
ENST00000479684 (LRRC48-005) 17972887-17977753 protein_coding
ENST00000490517 (LRRC48-003) 17972903-18016859 retained_intron
ENST00000496293 (LRRC48-013) 17994355-18004451 nonsense_mediated_decay
ENST00000577202 (LRRC48-012) 17992854-17994348 processed_transcript
ENST00000577477 (LRRC48-019) 18015811-18016859 retained_intron
ENST00000579376 (LRRC48-010) 18007024-18007827 protein_coding
ENST00000579977 (LRRC48-016) 17972962-17987961 protein_coding
ENST00000581264 (LRRC48-014) 17972873-17988049 protein_coding
ENST00000582416 (LRRC48-021) 17972813-17983858 protein_coding
ENST00000583171 (LRRC48-009) 17992765-18016651 nonsense_mediated_decay
ENST00000583995 (LRRC48-018) 18015727-18016889 processed_transcript
ENST00000584166 (LRRC48-008) 17972889-18007721 protein_coding
ENST00000585008 (LRRC48-017) 17972967-17973883 processed_transcript
ENST00000585108 (LRRC48-015) 17972918-17988070 protein_coding
ENSG00000197815 (RP1-253P7.4)
 ENST00000354746 (RP1-253P7.4-001) 17858227-17860041 antisense
ENSG00000232344 (AC087163.2)
 ENST00000457299 (AC087163.2-001) 18010643-18011822 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00058R_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000538-ENSMUSG00000056598 CGP 10090 11:60226714-60394341
GeneTranscriptPositionBiotype
ENSMUSG00000056598 (Lrrc48)
leucine rich repeat containing 48 		ENSMUST00000070805 (Lrrc48-003) 60353329-60372004 protein_coding
ENSMUST00000094140 (Lrrc48-002) 60353329-60377278 protein_coding
ENSMUST00000108722 (Lrrc48-201) 60353380-60394333 protein_coding
ENSMUST00000108723 (Lrrc48-001) 60353329-60394341 protein_coding
ENSMUST00000128905 (Lrrc48-004) 60353357-60375139 processed_transcript
ENSMUSG00000082148 (Gm12266)
predicted gene 12266 		ENSMUST00000120311 (Gm12266-001) 60343245-60344206 processed_pseudogene
ENSMUSG00000098349 (Gm27711)
predicted gene, 27711 		ENSMUST00000183802 (Gm27711-201) 60302707-60302824 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058R_0001ENSDARG00000041300ENSDART00000060527ENSDARG00000056394ENSDART00000097345CIL_00058R_0002ENSG00000171953ENST00000444058ENST00000462733ENST00000465337ENST00000467560ENST00000469327ENST00000474627ENST00000488753ENST00000496852ENST00000497871ENST00000577586ENST00000581698ENST00000584205ENST00000585101ENSG00000171962ENST00000313838ENST00000399182ENST00000399187ENST00000470048ENST00000479684ENST00000490517ENST00000496293ENST00000577202ENST00000577477ENST00000579376ENST00000579977ENST00000581264ENST00000582416ENST00000583171ENST00000583995ENST00000584166ENST00000585008ENST00000585108ENSG00000197815ENST00000354746ENSG00000232344ENST00000457299CIL_00058R_0003ENSMUSG00000056598ENSMUST00000070805ENSMUST00000094140ENSMUST00000108722ENSMUST00000108723ENSMUST00000128905ENSMUSG00000082148ENSMUST00000120311ENSMUSG00000098349ENSMUST00000183802
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00058R_0001ENSDARG00000041300ENSDART00000060527ENSDARG00000056394ENSDART00000097345CIL_00058R_0002ENSG00000171953ENST00000444058ENST00000462733ENST00000465337ENST00000467560ENST00000474627ENST00000496852ENST00000497871ENST00000577586ENST00000585101ENSG00000171962ENST00000313838ENST00000399187ENST00000490517ENST00000496293ENST00000583995ENST00000584166ENSG00000197815ENST00000354746ENSG00000232344ENST00000457299CIL_00058R_0003ENSMUSG00000056598ENSMUST00000070805ENSMUST00000094140ENSMUST00000108722ENSMUST00000108723ENSMUST00000128905ENSMUSG00000082148ENSMUST00000120311ENSMUSG00000098349ENSMUST00000183802
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041300 ENSDART00000060527 N/A N/A N/A 5.368±0.51 N/A N/A 0.129±0.09 1.378±0.00 N/A N/A 0.370±0.00 N/A N/A N/A
ENSDARG00000056394 ENSDART00000097345 N/A N/A N/A 6.507±0.00 N/A N/A 1.036±0.56 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171953 ENST00000444058 2.519±0.00 N/A N/A N/A 4.438±0.00 4.648±0.00 7.286±0.00 6.653±0.00 4.337±3.06 N/A 6.359±0.00 13.182±7.45 12.348±3.44 23.449±0.00
ENST00000462733 N/A N/A 0.681±0.00 2.315±0.00 0.726±0.14 N/A N/A 1.650±0.00 N/A N/A N/A 1.812±0.00 N/A N/A
ENST00000465337 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.304±0.00 N/A N/A N/A N/A
ENST00000467560 3.173±0.00 10.545±0.00 N/A N/A 4.865±0.00 7.340±0.00 N/A 10.234±0.00 6.722±0.00 N/A 6.996±0.00 9.807±0.00 N/A N/A
ENST00000469327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474627 1.115±0.00 3.061±0.00 0.937±0.00 2.646±0.76 1.580±0.09 1.210±0.28 2.579±1.63 1.340±0.98 2.010±0.00 N/A N/A 3.366±1.82 4.649±1.58 N/A
ENST00000488753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496852 N/A N/A N/A N/A N/A N/A N/A N/A 0.638±0.00 N/A N/A N/A N/A N/A
ENST00000497871 N/A N/A N/A N/A 3.232±0.00 1.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577586 N/A N/A N/A N/A N/A N/A 1.992±0.00 0.740±0.00 N/A N/A N/A N/A N/A N/A
ENST00000581698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585101 N/A N/A N/A N/A N/A N/A N/A 0.497±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000171962 ENST00000313838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.282±0.00 N/A 4.888±0.00
ENST00000399182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399187 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.992±0.00 N/A 5.182±0.00 N/A 10.175±0.00
ENST00000470048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490517 0.223±0.00 0.849±0.00 N/A N/A 0.397±0.00 N/A 0.147±0.00 1.156±0.00 N/A 1.426±0.00 0.425±0.00 0.701±0.35 N/A 2.159±0.16
ENST00000496293 N/A N/A N/A N/A N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A N/A N/A
ENST00000577202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583995 N/A N/A N/A N/A N/A N/A N/A N/A 1.046±0.00 N/A N/A N/A N/A N/A
ENST00000584166 N/A N/A 1.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.797±0.00
ENST00000585008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197815 ENST00000354746 0.497±0.00 1.139±0.00 N/A 1.689±0.17 0.918±0.17 N/A 1.594±0.01 0.478±0.00 0.148±0.00 0.352±0.00 0.254±0.09 1.044±0.60 0.118±0.00 2.684±0.00
ENSG00000232344 ENST00000457299 0.222±0.00 0.508±0.00 N/A 0.324±0.00 0.558±0.12 0.091±0.00 0.193±0.00 0.313±0.00 0.021±0.00 0.085±0.00 0.343±0.00 0.196±0.13 0.070±0.00 0.385±0.17
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000056598 ENSMUST00000070805 0.129±0.06 0.163±0.04 N/A N/A 0.046±0.00 0.189±0.12 N/A N/A 0.061±0.00 N/A N/A N/A 0.070±0.05 N/A
ENSMUST00000094140 0.148±0.05 0.174±0.12 0.131±0.03 0.315±0.02 0.107±0.04 0.123±0.00 0.257±0.08 0.440±0.14 0.097±0.04 N/A N/A 0.736±0.00 0.091±0.05 N/A
ENSMUST00000108722 N/A 0.320±0.08 N/A N/A 0.255±0.14 0.206±0.08 0.312±0.05 0.399±0.02 0.032±0.00 N/A 0.822±0.00 2.160±0.62 0.230±0.12 8.072±0.00
ENSMUST00000108723 0.256±0.13 0.200±0.02 0.633±0.17 4.075±3.69 0.184±0.00 N/A 0.932±0.15 0.554±0.22 0.170±0.04 6.743±1.13 0.869±0.18 6.784±5.35 0.227±0.06 36.764±4.42
ENSMUST00000128905 0.465±0.16 0.835±0.07 N/A 0.923±0.00 0.296±0.15 N/A 0.600±0.00 0.612±0.00 0.268±0.08 N/A N/A 8.267±3.11 N/A N/A
ENSMUSG00000082148 ENSMUST00000120311 0.314±0.16 0.301±0.21 N/A 0.071±0.00 0.252±0.09 0.292±0.12 0.207±0.07 0.682±0.16 0.127±0.07 0.365±0.26 0.054±0.01 0.279±0.21 0.089±0.06 0.131±0.10
ENSMUSG00000098349 ENSMUST00000183802 N/A N/A N/A 8.806±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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