C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 48
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056598 Lrrc48 10090 + 11:60353329-60394341 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070805 Lrrc48-003 60353329-60372004 protein_coding
  ENSMUST00000094140 Lrrc48-002 60353329-60377278 protein_coding
  ENSMUST00000108722 Lrrc48-201 60353380-60394333 protein_coding
  ENSMUST00000108723 Lrrc48-001 60353329-60394341 protein_coding
  ENSMUST00000128905 Lrrc48-004 60353357-60375139 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070805ENSMUST00000094140ENSMUST00000108722ENSMUST00000108723ENSMUST00000128905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070805 0.129±0.06 0.163±0.04 N/A N/A 0.046±0.00 0.189±0.12 N/A N/A 0.061±0.00 N/A N/A N/A 0.070±0.05 N/A
ENSMUST00000094140 0.148±0.05 0.174±0.12 0.131±0.03 0.315±0.02 0.107±0.04 0.123±0.00 0.257±0.08 0.440±0.14 0.097±0.04 N/A N/A 0.736±0.00 0.091±0.05 N/A
ENSMUST00000108722 N/A 0.320±0.08 N/A N/A 0.255±0.14 0.206±0.08 0.312±0.05 0.399±0.02 0.032±0.00 N/A 0.822±0.00 2.160±0.62 0.230±0.12 8.072±0.00
ENSMUST00000108723 0.256±0.13 0.200±0.02 0.633±0.17 4.075±3.69 0.184±0.00 N/A 0.932±0.15 0.554±0.22 0.170±0.04 6.743±1.13 0.869±0.18 6.784±5.35 0.227±0.06 36.764±4.42
ENSMUST00000128905 0.465±0.16 0.835±0.07 N/A 0.923±0.00 0.296±0.15 N/A 0.600±0.00 0.612±0.00 0.268±0.08 N/A N/A 8.267±3.11 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0003 CGP 11:60226714-60394341
CIL_0000DY CIL_0000DY_0002 CGP 11:60353329-60418457

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041300 lrrc48 leucine rich repeat containing 48 protein_coding Danio_rerio
ENSG00000171962 LRRC48 leucine rich repeat containing 48 protein_coding Homo_sapiens

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