C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptopodin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171992 SYNPO 9606 + 5:150601080-150659220 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307662 SYNPO-001 150640658-150659220 protein_coding
  ENST00000394243 SYNPO-002 150601080-150654232 protein_coding
  ENST00000518872 SYNPO-005 150624715-150648914 processed_transcript
  ENST00000519664 SYNPO-004 150640678-150652337 protein_coding
  ENST00000522122 SYNPO-003 150617644-150652334 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307662ENST00000394243ENST00000519664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307662 33.019±0.00 22.444±0.00 7.117±0.00 N/A 49.804±48.59 26.845±0.00 N/A 8.895±7.42 2.955±0.00 15.568±10.79 N/A 63.663±67.76 16.138±11.99 9.446±6.29
ENST00000394243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.533±0.00 N/A
ENST00000519664 N/A N/A N/A 36.349±21.79 N/A N/A 98.163±83.59 0.432±0.00 0.919±0.00 14.935±0.00 312.820±227.97 N/A N/A 10.479±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0003779 ISS actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005923 IEA tight junction
GO:0015629 ISS actin cytoskeleton
GO:0032233 IEA positive regulation of actin filament bundle assembly
GO:0043197 TAS dendritic spine
GO:0045211 IEA postsynaptic membrane
GO:0051492 ISS regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086156 SYNPO synaptopodin protein_coding Danio_rerio
ENSMUSG00000043079 Synpo synaptopodin protein_coding Mus_musculus

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