C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptopodin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307662 SYNPO-001 ENSG00000171992 9606 + 5:150640658-150659220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000307662
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000307662 33.019±0.00 22.444±0.00 7.117±0.00 49.804±48.59 26.845±0.00 8.895±7.42 2.955±0.00 15.568±10.79 63.663±67.76 16.138±11.99 9.446±6.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005923 IEA tight junction
GO:0015629 ISS actin cytoskeleton
GO:0032233 IEA positive regulation of actin filament bundle assembly
GO:0043197 TAS dendritic spine
GO:0045211 IEA postsynaptic membrane
GO:0051492 ISS regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115318 Synpo-005 protein_coding Mus_musculus 0 1838
ENSMUST00000155195 Synpo-004 protein_coding Mus_musculus 0 1807
ENSMUST00000143275 Synpo-008 protein_coding Mus_musculus 0 1766
ENSMUST00000130360 Synpo-002 protein_coding Mus_musculus 0 1766
ENSMUST00000130044 Synpo-003 protein_coding Mus_musculus 0 1766
ENSMUST00000097566 Synpo-001 protein_coding Mus_musculus 0 1766
ENSMUST00000128528 Synpo-006 processed_transcript Mus_musculus 0 643
ENSMUST00000123288 Synpo-011 protein_coding Mus_musculus 0 348
ENSMUST00000160395 Synpo-012 processed_transcript Mus_musculus 0 270

Loading