C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172046 USP19 9606 - 3:49108046-49120938 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306026 USP19-016 49115581-49120818 protein_coding
  ENST00000398888 USP19-001 49108675-49120938 protein_coding
  ENST00000398892 USP19-002 49108673-49120879 protein_coding
  ENST00000398896 USP19-004 49108046-49117978 protein_coding
  ENST00000398898 USP19-005 49108046-49119287 protein_coding
  ENST00000417901 USP19-012 49108050-49120808 protein_coding
  ENST00000434032 USP19-014 49108753-49120831 protein_coding
  ENST00000453664 USP19-013 49108131-49120938 protein_coding
  ENST00000464931 USP19-010 49116048-49117711 processed_transcript
  ENST00000465902 USP19-018 49117965-49120668 processed_transcript
  ENST00000479073 USP19-006 49116734-49117358 protein_coding
  ENST00000480163 USP19-009 49117201-49117788 processed_transcript
  ENST00000483667 USP19-017 49110013-49110757 processed_transcript
  ENST00000488993 USP19-007 49117119-49120931 processed_transcript
  ENST00000491859 USP19-008 49117304-49120874 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306026ENST00000398888ENST00000398892ENST00000398896ENST00000398898ENST00000417901ENST00000434032ENST00000453664ENST00000465902
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306026 N/A N/A N/A N/A 2.951±0.00 2.122±0.00 1.476±0.00 1.917±0.00 3.233±0.00 1.615±0.00 N/A 1.669±0.00 N/A N/A
ENST00000398888 N/A N/A N/A 0.743±0.00 N/A N/A N/A N/A N/A N/A N/A 2.156±0.27 N/A 3.815±0.00
ENST00000398892 1.226±0.00 N/A N/A 1.250±0.00 2.793±0.00 N/A 1.589±0.00 2.098±0.00 0.752±0.00 1.360±0.00 5.538±0.00 2.588±0.00 N/A N/A
ENST00000398896 N/A N/A 1.403±0.00 1.877±0.89 2.910±0.00 2.823±0.00 3.262±0.00 6.209±0.00 4.277±0.00 N/A 6.336±0.00 5.277±2.66 4.737±0.66 10.561±3.15
ENST00000398898 N/A N/A N/A N/A N/A N/A 0.415±0.00 N/A 0.539±0.00 N/A 4.096±0.00 N/A 2.534±0.00 N/A
ENST00000417901 3.197±0.00 2.038±0.00 N/A 0.648±0.00 1.329±0.00 0.646±0.00 N/A N/A N/A 1.279±0.26 N/A 3.279±2.07 2.962±0.51 5.389±0.33
ENST00000434032 1.287±0.00 N/A N/A 1.487±0.00 1.974±0.00 1.090±0.00 2.046±0.00 2.330±0.00 N/A N/A 3.898±1.20 N/A N/A N/A
ENST00000453664 1.408±0.00 2.173±0.00 N/A 1.886±0.00 5.309±0.00 4.403±0.00 4.576±0.00 4.452±0.00 2.330±0.00 2.404±0.00 13.718±0.00 2.560±0.36 2.074±0.69 6.514±0.00
ENST00000465902 N/A N/A 2.976±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005N5 CIL_0005N5_0002 CGP 3:49108046-49133118

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005829 IEA cytosol
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0014732 ISS skeletal muscle atrophy
GO:0016021 IEA integral component of membrane
GO:0016579 ISS protein deubiquitination
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0031647 ISS regulation of protein stability
GO:0034976 IEP response to endoplasmic reticulum stress
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0046872 IEA metal ion binding
GO:0048642 ISS negative regulation of skeletal muscle tissue development
GO:0090068 ISS positive regulation of cell cycle process
GO:1900037 IMP regulation of cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004132 usp19 ubiquitin specific peptidase 19 protein_coding Danio_rerio
ENSMUSG00000006676 Usp19 ubiquitin specific peptidase 19 protein_coding Mus_musculus

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