C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417901 USP19-012 ENSG00000172046 9606 - 3:49108050-49120808 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungOvaryPlacentaTestisENST00000417901
Transcript ID Adipose Adrenal Brain Breast Colon Lung Ovary Placenta Testis
ENST00000417901 3.197±0.00 2.038±0.00 0.648±0.00 1.329±0.00 0.646±0.00 1.279±0.26 3.279±2.07 2.962±0.51 5.389±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005N5 CIL_0005N5_0002 CGP 3:49108046-49133118

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0014732 ISS skeletal muscle atrophy
GO:0016021 IEA integral component of membrane
GO:0016579 ISS protein deubiquitination
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0031647 ISS regulation of protein stability
GO:0034976 IEP response to endoplasmic reticulum stress
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0046872 IEA metal ion binding
GO:0048642 ISS negative regulation of skeletal muscle tissue development
GO:0090068 ISS positive regulation of cell cycle process
GO:1900037 IMP regulation of cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178075 Usp19-204 protein_coding Mus_musculus 0 4939
ENSMUST00000085044 Usp19-202 protein_coding Mus_musculus 0 4918
ENSMUST00000006854 Usp19-201 protein_coding Mus_musculus 0 4375
ENSMUST00000166103 Usp19-203 protein_coding Mus_musculus 0 3934

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