C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor, mitochondrial
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172171 TEFM 9606 - 17:30897336-30906820 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306049 TEFM-003 30898986-30906235 nonsense_mediated_decay
  ENST00000541382 TEFM-005 30904039-30906235 retained_intron
  ENST00000579183 TEFM-006 30897336-30899115 processed_transcript
  ENST00000580840 TEFM-004 30898986-30906235 protein_coding
  ENST00000581216 TEFM-001 30898983-30906820 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000541382ENST00000580840ENST00000581216
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000541382 N/A 5.782±0.00 4.642±0.00 7.339±0.00 2.996±0.06 5.693±0.18 3.951±0.00 9.414±0.00 6.007±0.00 3.114±0.70 5.286±0.41 4.340±0.00
ENST00000580840 1.225±0.00 N/A 0.496±0.00 N/A 1.089±0.00 N/A 1.131±0.00 N/A N/A N/A 0.801±0.21 N/A
ENST00000581216 N/A N/A N/A N/A N/A N/A 1.682±0.00 N/A N/A N/A 2.261±0.00 1.261±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GS CIL_0004GS_0002 CGP 17:30831970-30906820
CIL_000740 CIL_000740_0001 CGP 17:30897336-30959322

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0006119 IMP oxidative phosphorylation
GO:0006259 IDA DNA metabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006390 IMP transcription from mitochondrial promoter
GO:0030337 IDA DNA polymerase processivity factor activity
GO:0030529 IDA ribonucleoprotein complex
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059469 tefm transcription elongation factor, mitochondrial protein_coding Danio_rerio
ENSMUSG00000046909 Tefm transcription elongation factor, mitochondrial protein_coding Mus_musculus

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