C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription elongation factor, mitochondrial
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046909 Tefm 10090 - 11:80136678-80142175 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050207 Tefm-001 80136678-80142175 protein_coding
  ENSMUST00000131601 Tefm-002 80137946-80142143 protein_coding
  ENSMUST00000136996 Tefm-003 80136678-80139909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050207ENSMUST00000131601ENSMUST00000136996
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050207 3.582±0.71 1.226±0.45 5.701±0.09 3.409±0.48 2.917±1.01 1.847±0.64 7.062±0.72 5.138±0.34 4.468±1.68 2.388±0.30 7.857±0.77 2.960±1.25 8.461±3.45 1.848±0.29
ENSMUST00000131601 0.864±0.06 1.059±0.29 N/A 1.326±0.04 0.778±0.18 1.074±0.27 1.774±0.22 1.341±0.14 1.142±0.22 0.885±0.13 N/A 1.113±0.48 2.206±0.83 1.201±0.95
ENSMUST00000136996 N/A N/A N/A 1.074±0.24 N/A 0.706±0.00 N/A N/A 1.082±0.00 N/A N/A 1.698±0.63 2.619±0.00 0.767±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GS CIL_0004GS_0003 CGP 11:80089400-80142175
CIL_000740 CIL_000740_0002 CGP 11:80136678-80178958

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IEA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0006119 ISS oxidative phosphorylation
GO:0006259 IEA DNA metabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006390 ISS transcription from mitochondrial promoter
GO:0030337 ISS DNA polymerase processivity factor activity
GO:0030529 ISS ribonucleoprotein complex
GO:0042645 ISS mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059469 tefm transcription elongation factor, mitochondrial protein_coding Danio_rerio
ENSG00000172171 TEFM transcription elongation factor, mitochondrial protein_coding Homo_sapiens

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