C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein, 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341356 CORO1B-001 ENSG00000172725 9606 - 11:67438076-67443512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000341356
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000341356 41.856±0.00 38.403±0.00 7.210±0.00 20.925±14.03 19.320±16.07 5.323±0.00 26.406±0.00 16.194±0.00 21.881±0.00 43.135±16.19 41.733±9.79 17.080±5.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005884 IDA actin filament
GO:0005925 IDA focal adhesion
GO:0015629 IBA actin cytoskeleton
GO:0016477 IDA cell migration
GO:0030027 IDA lamellipodium
GO:0030036 IBA actin cytoskeleton organization
GO:0031252 IDA cell leading edge
GO:0031529 IDA ruffle organization
GO:0034316 IDA negative regulation of Arp2/3 complex-mediated actin nucleation
GO:0035767 IDA endothelial cell chemotaxis
GO:0042060 IDA wound healing
GO:0042802 IDA identical protein binding
GO:0051015 IBA actin filament binding
GO:0051017 IDA actin filament bundle assembly
GO:0070062 IDA extracellular vesicular exosome
GO:0071933 IDA Arp2/3 complex binding
GO:0090135 IDA actin filament branching
GO:1902463 IDA protein localization to cell leading edge
GO:2000394 IDA positive regulation of lamellipodium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181494 CORO1B-001 protein_coding Mus_musculus 0 1683
ENSMUST00000008893 Coro1b-001 protein_coding Mus_musculus 0 1683
ENSMUST00000180605 CORO1B-005 processed_transcript Mus_musculus 0 811
ENSMUST00000134194 Coro1b-005 processed_transcript Mus_musculus 0 811
ENSMUST00000180620 CORO1B-002 protein_coding Mus_musculus 0 741
ENSMUST00000123874 Coro1b-002 protein_coding Mus_musculus 0 741
ENSDART00000004217 coro1ca-001 protein_coding Danio_rerio 0 660
ENSMUST00000180560 CORO1B-007 retained_intron Mus_musculus 0 640
ENSMUST00000140419 Coro1b-007 retained_intron Mus_musculus 0 640
ENSMUST00000181608 CORO1B-008 retained_intron Mus_musculus 0 590
ENSMUST00000135498 Coro1b-008 retained_intron Mus_musculus 0 590
ENSMUST00000181861 CORO1B-006 retained_intron Mus_musculus 0 588
ENSMUST00000143613 Coro1b-006 retained_intron Mus_musculus 0 588
ENSMUST00000181219 CORO1B-009 retained_intron Mus_musculus 0 468
ENSMUST00000148189 Coro1b-009 retained_intron Mus_musculus 0 468
ENSDART00000045880 coro6-201 protein_coding Danio_rerio 0 292
ENSDART00000131005 coro6-202 protein_coding Danio_rerio 0 292
ENSMUST00000142878 Coro1b-003 retained_intron Mus_musculus 0 294
ENSMUST00000148733 Coro1b-004 retained_intron Mus_musculus 0 340
ENSMUST00000180891 CORO1B-003 retained_intron Mus_musculus 0 294
ENSMUST00000181909 CORO1B-004 retained_intron Mus_musculus 0 340

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