C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VI, alpha 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172752 COL6A5 9606 + 3:130345516-130484844 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265379 COL6A5-201 130345516-130484844 protein_coding
  ENST00000312481 COL6A5-001 130345516-130484844 nonsense_mediated_decay
  ENST00000373157 COL6A5-004 130440510-130484156 protein_coding
  ENST00000512482 COL6A5-002 130443484-130477338 protein_coding
  ENST00000512836 COL6A5-003 130431463-130484844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENST00000265379ENST00000312481ENST00000373157ENST00000512482ENST00000512836
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENST00000265379 0.005±0.00 0.004±0.00 0.002±0.00 N/A N/A N/A N/A 0.053±0.00 0.006±0.00 N/A
ENST00000312481 0.005±0.00 0.004±0.00 0.002±0.00 N/A N/A 0.556±0.00 0.727±0.38 0.019±0.00 0.006±0.00 0.248±0.00
ENST00000373157 N/A N/A N/A N/A 0.243±0.00 N/A N/A 0.055±0.02 0.046±0.00 N/A
ENST00000512482 N/A N/A 0.091±0.00 0.063±0.00 N/A N/A N/A N/A N/A N/A
ENST00000512836 0.011±0.00 N/A N/A N/A 0.032±0.00 N/A 1.430±0.00 0.015±0.00 0.032±0.00 0.108±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 ISS extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079752 col6a6 collagen, type VI, alpha 6 protein_coding Danio_rerio
ENSMUSG00000091345 Col6a5 collagen, type VI, alpha 5 protein_coding Mus_musculus

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