C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000312481 COL6A5-001 ENSG00000172752 9606 + 3:130345516-130484844 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverLungOvaryPlacentaTestisENST00000312481
Transcript ID Adrenal Bladder Brain Liver Lung Ovary Placenta Testis
ENST00000312481 0.005±0.00 0.004±0.00 0.002±0.00 0.556±0.00 0.727±0.38 0.019±0.00 0.006±0.00 0.248±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 ISS extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165165 Col6a5-201 protein_coding Mus_musculus 0 4820
ENSMUST00000190193 Col6a5-001 protein_coding Mus_musculus 0 4815
ENSMUST00000166431 Col6a6-201 protein_coding Mus_musculus 0 555
ENSMUST00000060896 Col6a6-002 protein_coding Mus_musculus 0 555
ENSMUST00000098441 Col6a6-001 protein_coding Mus_musculus 0 555

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