C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VI, alpha 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000091345 Col6a5 10090 - 9:105856078-105960643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000165165 Col6a5-201 105858668-105960643 protein_coding
  ENSMUST00000189127 Col6a5-002 105875694-105881806 retained_intron
  ENSMUST00000190193 Col6a5-001 105856078-105960643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165165ENSMUST00000189127ENSMUST00000190193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165165 0.241±0.07 0.195±0.14 0.321±0.00 N/A 0.198±0.10 0.219±0.09 0.046±0.01 0.064±0.02 0.037±0.04 0.186±0.02 0.012±0.00 1.161±0.57 0.275±0.35 0.683±0.44
ENSMUST00000189127 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A 0.041±0.01 N/A 0.014±0.00 N/A
ENSMUST00000190193 0.218±0.07 0.168±0.04 0.627±0.00 0.046±0.02 0.066±0.02 0.143±0.03 0.046±0.02 0.065±0.00 0.022±0.02 0.087±0.01 0.026±0.01 0.786±0.64 0.036±0.00 0.443±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 ISO extracellular region
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079752 col6a6 collagen, type VI, alpha 6 protein_coding Danio_rerio
ENSG00000172752 COL6A5 collagen, type VI, alpha 5 protein_coding Homo_sapiens

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