C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB43, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172780 RAB43 9606 - 3:129087569-129122801 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315150 RAB43-001 129087569-129121790 protein_coding
  ENST00000393304 RAB43-002 129087569-129121804 protein_coding
  ENST00000393305 RAB43-004 129087569-129122150 protein_coding
  ENST00000393307 RAB43-005 129087569-129122014 protein_coding
  ENST00000393308 RAB43-003 129087569-129121922 protein_coding
  ENST00000457077 RAB43-006 129095115-129122801 protein_coding
  ENST00000476465 RAB43-007 129090494-129121781 protein_coding
  ENST00000615093 RAB43-201 129092514-129121804 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungOvaryENST00000315150ENST00000393307
Transcript ID Adipose Adrenal Breast Kidney Liver Lung Ovary
ENST00000315150 4.145±0.00 4.257±0.00 3.291±0.00 3.475±0.00 12.147±0.00 7.317±0.00 N/A
ENST00000393307 N/A N/A N/A N/A N/A N/A 2.981±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B6 CIL_0003B6_0001 CGP 3:129060767-129122801
CIL_000311 CIL_000311_0001 CGP 3:129087569-129161036

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005794 IDA Golgi apparatus
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007030 IMP Golgi organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019068 IMP virion assembly
GO:0035526 IMP retrograde transport, plasma membrane to Golgi
GO:0045335 IDA phagocytic vesicle
GO:0070062 IDA extracellular vesicular exosome
GO:0090382 IMP phagosome maturation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059404 RAB43 RAB43, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000030055 Rab43 RAB43, member RAS oncogene family protein_coding Mus_musculus

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