C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB43, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030055 Rab43 10090 - 6:87788853-87812164 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032134 Rab43-003 87791747-87809757 protein_coding
  ENSMUST00000032135 Rab43-002 87793969-87811779 protein_coding
  ENSMUST00000078647 Rab43-001 87788853-87811779 protein_coding
  ENSMUST00000123216 Rab43-005 87792798-87812098 processed_transcript
  ENSMUST00000125377 Rab43-004 87792152-87812164 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032135ENSMUST00000078647ENSMUST00000125377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032135 N/A 9.619±2.90 N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.537±2.58 N/A N/A
ENSMUST00000078647 17.147±8.11 14.606±1.08 8.567±1.18 1.562±0.41 21.576±4.66 34.148±5.13 3.268±0.93 17.267±1.16 32.164±18.29 16.673±2.91 0.701±0.18 22.198±6.35 5.224±2.03 4.353±2.00
ENSMUST00000125377 N/A N/A N/A N/A N/A N/A 2.671±0.00 N/A N/A N/A 1.176±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B6 CIL_0003B6_0002 CGP 6:87778136-87812164
CIL_000311 CIL_000311_0002 CGP 6:87788853-87838759

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005794 ISS Golgi apparatus
GO:0007030 ISS Golgi organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019068 IEA virion assembly
GO:0035526 ISS retrograde transport, plasma membrane to Golgi
GO:0045335 ISS phagocytic vesicle
GO:0070062 IEA extracellular vesicular exosome
GO:0090382 ISS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059404 RAB43 RAB43, member RAS oncogene family protein_coding Danio_rerio
ENSG00000172780 RAB43 RAB43, member RAS oncogene family protein_coding Homo_sapiens

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