C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB43, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315150 RAB43-001 ENSG00000172780 9606 - 3:129087569-129121790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungENST00000315150
Transcript ID Adipose Adrenal Breast Kidney Liver Lung
ENST00000315150 4.145±0.00 4.257±0.00 3.291±0.00 3.475±0.00 12.147±0.00 7.317±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B6 CIL_0003B6_0001 CGP 3:129060767-129122801
CIL_000311 CIL_000311_0001 CGP 3:129087569-129161036

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005794 IDA Golgi apparatus
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007030 IMP Golgi organization
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019068 IMP virion assembly
GO:0035526 IMP retrograde transport, plasma membrane to Golgi
GO:0045335 IDA phagocytic vesicle
GO:0070062 IDA extracellular vesicular exosome
GO:0090382 IMP phagosome maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078647 Rab43-001 protein_coding Mus_musculus 0 806
ENSMUST00000032135 Rab43-002 protein_coding Mus_musculus 0 529
ENSMUST00000125377 Rab43-004 processed_transcript Mus_musculus 0 525
ENSMUST00000032134 Rab43-003 protein_coding Mus_musculus 0 525

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